Wenqiang Xu, Yajing Ren, Yuxiao Xia, Lin Liu, Xiangfeng Meng, Guanjun Chen, Weixin Zhang, Weifeng Liu
{"title":"一种新的转录抑制因子特异性调控里氏木霉木聚糖酶基因1。","authors":"Wenqiang Xu, Yajing Ren, Yuxiao Xia, Lin Liu, Xiangfeng Meng, Guanjun Chen, Weixin Zhang, Weifeng Liu","doi":"10.1186/s13068-023-02417-w","DOIUrl":null,"url":null,"abstract":"<div><h3>Background</h3><p>The well-known industrial fungus <i>Trichoderma reesei</i> has an excellent capability of secreting a large amount of cellulases and xylanases. The induced expression of cellulase and xylanase genes is tightly controlled at the transcriptional level. However, compared to the intensive studies on the intricate regulatory mechanism of cellulase genes, efforts to understand how xylanase genes are regulated are relatively limited, which impedes the further improvement of xylanase production by <i>T. reesei</i> via rational strain engineering.</p><h3>Results</h3><p>To identify transcription factors involved in regulating xylanase gene expression in <i>T. reesei</i>, yeast one-hybrid screen was performed based on the promoters of two major extracellular xylanase genes <i>xyn1</i> and <i>xyn2</i>. A putative transcription factor named XTR1 showing significant binding capability to the <i>xyn1</i> promoter but not that of <i>xyn2</i>, was successfully isolated. Deletion of <i>xtr1</i> significantly increased the transcriptional level of <i>xyn1</i>, but only exerted a minor promoting effect on that of <i>xyn2</i>. The xylanase activity was increased by ~ 50% with XTR1 elimination but the cellulase activity was hardly affected. Subcellular localization analysis of XTR1 fused to a green fluorescence protein demonstrated that XTR1 is a nuclear protein. Further analyses revealed the precise binding site of XTR1 and nucleotides critical for the binding within the <i>xyn1</i> promoter. Moreover, competitive EMSAs indicated that XTR1 competes with the essential transactivator XYR1 for binding to the <i>xyn1</i> promoter.</p><h3>Conclusions</h3><p>XTR1 represents a new transcriptional repressor specific for controlling xylanase gene expression. Isolation and functional characterization of this new factor not only contribute to further understanding the stringent regulatory network of xylanase genes, but also provide important clues for boosting xylanase biosynthesis in <i>T. reesei</i>.</p></div>","PeriodicalId":494,"journal":{"name":"Biotechnology for Biofuels","volume":"16 1","pages":""},"PeriodicalIF":6.1000,"publicationDate":"2023-10-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10612264/pdf/","citationCount":"0","resultStr":"{\"title\":\"A novel transcriptional repressor specifically regulates xylanase gene 1 in Trichoderma reesei\",\"authors\":\"Wenqiang Xu, Yajing Ren, Yuxiao Xia, Lin Liu, Xiangfeng Meng, Guanjun Chen, Weixin Zhang, Weifeng Liu\",\"doi\":\"10.1186/s13068-023-02417-w\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><h3>Background</h3><p>The well-known industrial fungus <i>Trichoderma reesei</i> has an excellent capability of secreting a large amount of cellulases and xylanases. The induced expression of cellulase and xylanase genes is tightly controlled at the transcriptional level. However, compared to the intensive studies on the intricate regulatory mechanism of cellulase genes, efforts to understand how xylanase genes are regulated are relatively limited, which impedes the further improvement of xylanase production by <i>T. reesei</i> via rational strain engineering.</p><h3>Results</h3><p>To identify transcription factors involved in regulating xylanase gene expression in <i>T. reesei</i>, yeast one-hybrid screen was performed based on the promoters of two major extracellular xylanase genes <i>xyn1</i> and <i>xyn2</i>. A putative transcription factor named XTR1 showing significant binding capability to the <i>xyn1</i> promoter but not that of <i>xyn2</i>, was successfully isolated. Deletion of <i>xtr1</i> significantly increased the transcriptional level of <i>xyn1</i>, but only exerted a minor promoting effect on that of <i>xyn2</i>. The xylanase activity was increased by ~ 50% with XTR1 elimination but the cellulase activity was hardly affected. Subcellular localization analysis of XTR1 fused to a green fluorescence protein demonstrated that XTR1 is a nuclear protein. Further analyses revealed the precise binding site of XTR1 and nucleotides critical for the binding within the <i>xyn1</i> promoter. Moreover, competitive EMSAs indicated that XTR1 competes with the essential transactivator XYR1 for binding to the <i>xyn1</i> promoter.</p><h3>Conclusions</h3><p>XTR1 represents a new transcriptional repressor specific for controlling xylanase gene expression. 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A novel transcriptional repressor specifically regulates xylanase gene 1 in Trichoderma reesei
Background
The well-known industrial fungus Trichoderma reesei has an excellent capability of secreting a large amount of cellulases and xylanases. The induced expression of cellulase and xylanase genes is tightly controlled at the transcriptional level. However, compared to the intensive studies on the intricate regulatory mechanism of cellulase genes, efforts to understand how xylanase genes are regulated are relatively limited, which impedes the further improvement of xylanase production by T. reesei via rational strain engineering.
Results
To identify transcription factors involved in regulating xylanase gene expression in T. reesei, yeast one-hybrid screen was performed based on the promoters of two major extracellular xylanase genes xyn1 and xyn2. A putative transcription factor named XTR1 showing significant binding capability to the xyn1 promoter but not that of xyn2, was successfully isolated. Deletion of xtr1 significantly increased the transcriptional level of xyn1, but only exerted a minor promoting effect on that of xyn2. The xylanase activity was increased by ~ 50% with XTR1 elimination but the cellulase activity was hardly affected. Subcellular localization analysis of XTR1 fused to a green fluorescence protein demonstrated that XTR1 is a nuclear protein. Further analyses revealed the precise binding site of XTR1 and nucleotides critical for the binding within the xyn1 promoter. Moreover, competitive EMSAs indicated that XTR1 competes with the essential transactivator XYR1 for binding to the xyn1 promoter.
Conclusions
XTR1 represents a new transcriptional repressor specific for controlling xylanase gene expression. Isolation and functional characterization of this new factor not only contribute to further understanding the stringent regulatory network of xylanase genes, but also provide important clues for boosting xylanase biosynthesis in T. reesei.
期刊介绍:
Biotechnology for Biofuels is an open access peer-reviewed journal featuring high-quality studies describing technological and operational advances in the production of biofuels, chemicals and other bioproducts. The journal emphasizes understanding and advancing the application of biotechnology and synergistic operations to improve plants and biological conversion systems for the biological production of these products from biomass, intermediates derived from biomass, or CO2, as well as upstream or downstream operations that are integral to biological conversion of biomass.
Biotechnology for Biofuels focuses on the following areas:
• Development of terrestrial plant feedstocks
• Development of algal feedstocks
• Biomass pretreatment, fractionation and extraction for biological conversion
• Enzyme engineering, production and analysis
• Bacterial genetics, physiology and metabolic engineering
• Fungal/yeast genetics, physiology and metabolic engineering
• Fermentation, biocatalytic conversion and reaction dynamics
• Biological production of chemicals and bioproducts from biomass
• Anaerobic digestion, biohydrogen and bioelectricity
• Bioprocess integration, techno-economic analysis, modelling and policy
• Life cycle assessment and environmental impact analysis