使用多级串联质谱数据库开发聚糖快速分析系统:-迈向每个人都可以在没有专业知识的情况下分析聚糖结构的时代- @@@ -步步高升,步步高升,步步高升

Q4 Social Sciences Synthesiology Pub Date : 2015-01-01 DOI:10.5571/SYNTHENG.8.4_196
A. Kameyama, N. Kikuchi, S. Nakaya, S. Funatsu
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引用次数: 0

摘要

−196−synthesis iology英文版Vol.8 No.4 pp.196-210(2016年3月)主要原因是,与核酸和蛋白质不同的是,如果读取序列就可以知道初级结构,它们有分支结构、位置异构体、立体异构体等,简单的序列解码不足以了解聚糖结构(图1)。这意味着聚糖分析的核心是如何识别异构体。聚糖结构分析的难度在合成学第7卷第2期(2014)“凝集素微阵列的开发,一种用于聚糖分析的先进系统”中描述。聚糖的结构分析是一项由技术精湛的专家完成的工作,这是聚糖研究的一个主要瓶颈。如果任何人都可以轻松地进行聚糖结构分析,那么可以预期,聚糖研究的范围将会扩大,对尚不清楚的聚糖功能的澄清及其应用将会迅速发展。在SG项目中,采用了两种方法进行多糖结构分析。一种是聚糖分析方法,其中凝集素阵列,其中可以识别部分聚糖结构的各种类型的蛋白质(凝集素),被安排在载玻片上。这种方法在寻找疾病生物标记物和干细胞标记物方面取得了成果。寻找标记物要求灵敏度而非精度,而易于制备的高灵敏度凝集素微阵列被有效利用。另一方面,如果想在分子水平上澄清标记物本身或检查多种聚糖类型的含量,本文描述的质谱分析聚糖是有用的。这两种方法相辅相成,取长补短。在本文中,我们
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Development of a rapid analytical system for glycans using a multistage tandem mass spectral database: — Toward an era where everyone can analyze glycan structure without specialist knowledge —@@@―誰でも簡単に糖鎖を調べることができる時代へ―
−196− Synthesiology English edition Vol.8 No.4 pp.196-210 (Mar. 2016) The structural analysis of glycans is difficult. The main reason is because, unlike the nucleic acids and proteins for which the primary structure can be known if the sequence is read, there are branch structures, positional isomerisms, stereoisomerisms, and others, and simple sequence decoding is not sufficient to know the glycan structure (Fig. 1). This means that the heart of glycan analysis is how to identify the isomers. The difficulty of glycan structure analysis is described in Synthesiology Volume 7 Issue 2 (2014) “Development of lectin microarray, an advanced system for glycan profiling.” The glycan structure analysis was a work undertaken by specialists with skilled craftsmanship, and this was a major bottleneck in glycan research. If glycan structure analysis can be conducted easily by anyone, it is expected that the range of glycan research will widen and the clarification of glycan functions that still remain mysterious and their application will rapidly progress. In the SG Project, two approaches were taken for the glycan structure analysis. One is the glycan profiling method where the lectin array, in which various types of proteins (lectin) that can identify the partial glycan structure, is arranged on the slide glass. This method yielded results in the search for disease biomarkers and stem cell markers. The search for markers demands sensitivity rather than precision, and the highly sensitive lectin microarray that can be prepared easily is utilized effectively. On the other hand, if one wanted to clarify the marker itself at a molecular level or check the content of the multiple glycan types, glycan analysis by mass spectrometry described in this paper is useful. The two methods mutually supplement each other’s weaknesses. In this paper, we
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