增强化学位移分析用于蛋白质二级结构预测

IF 0.4 Q4 BIOCHEMICAL RESEARCH METHODS Journal of the Korean magnetic resonance society Pub Date : 2014-06-20 DOI:10.6564/JKMRS.2014.18.1.036
Won-Je Kim, J. Rhee, Jong-Jae Yi, Bong‐Jin Lee, W. Son
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引用次数: 1

摘要

利用指定主链化学位移法预测蛋白质二级结构,因其简便、灵活而得到了广泛的应用。基于化学位移的分析方法虽然有用,但也存在同位素位移和溶剂相互作用等缺陷。本文证明了对蛋白质二级结构的修正化学位移分析。包括考虑氘同位素效应的化学位移校正,并采用基于概率的方法计算化学位移指数。增强方法成功地应用于结核分枝杆菌的一种蛋白。对化学位移分析进行修正,可以提高溶液中蛋白质和小分子二级结构预测的准确性。
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Enhanced Chemical Shift Analysis for Secondary Structure prediction of protein
Predicting secondary structure of protein through assigned backbone chemical shifts has been used widely because of its convenience and flexibility. In spite of its usefulness, chemical shift based analysis has some defects including isotopic shifts and solvent interaction. Here, it is shown that corrected chemical shift analysis for secondary structure of protein. It is included chemical shift correction through consideration of deuterium isotopic effect and calculate chemical shift index using probability-based methods. Enhanced method was applied successfully to one of the proteins from Mycobacterium tuberculosis. It is suggested that correction of chemical shift analysis could increase accuracy of secondary structure prediction of protein and small molecule in solution.
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Journal of the Korean magnetic resonance society
Journal of the Korean magnetic resonance society BIOCHEMICAL RESEARCH METHODS-
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