环嗪衍生物作为抗高血压药物的计算机预测药物再利用。

In silico pharmacology Pub Date : 2023-10-25 eCollection Date: 2023-01-01 DOI:10.1007/s40203-023-00164-2
M S Afanamol, A Deepika Dinesh, K Shifa Ali, Ajeesh Vengamthodi, Arun Rasheed
{"title":"环嗪衍生物作为抗高血压药物的计算机预测药物再利用。","authors":"M S Afanamol,&nbsp;A Deepika Dinesh,&nbsp;K Shifa Ali,&nbsp;Ajeesh Vengamthodi,&nbsp;Arun Rasheed","doi":"10.1007/s40203-023-00164-2","DOIUrl":null,"url":null,"abstract":"<p><p>Cardiovascular diseases are the primary factor for increased mortality rates around the world. Atherosclerosis brought on by high serum cholesterol can result in coronary heart disease (CHD). The risk of CHD is markedly reduced by lowering serum cholesterol levels. Scientists across the world are inventing new treatment regimens for lowering blood lipid levels. In this work, we repurposed the already established drugs, i.e., cyclizine derivatives as antihyperlipidemic agents. The repurposing was done based on the similarity of the selected cyclizine derivatives with the already established antihyperlipidemic drug, fenofibrate. Computational studies were performed and the 16 cyclizine derivatives docked against PPAR. alpha scored higher than fenofibrate. Lifarizine and medibazine outperform fenofibrate inmmgbsa. Fenofibrate, etodroxizine, meclizine, and cinnarizine had similar mmgbsa scores. The ADME properties of these compounds were performed and from that etodroxizine and levocetirizine were found to have better properties. The computational studies were performed using the Schrodinger software, maestro 12.8. The \"Protein Preparation Wizard\" module in the Maestro panel was used to create the protein structure and OPLS4 force field was used for energy minimization. The maestro builder panel's \"Ligprep\", \"Receptor Grid Generation\" and \"Ligand Docking\" modules were then used to prepare ligands, receptor grids and to perform docking respectively. MMGBSA was performed on the \"prime MMGBSA\" segment. Using the \"Qikprop\" setting in the maestro panel, a number of ADMET properties were predicted, and the program was run in default mode using vsgb as the solvation model.</p>","PeriodicalId":94038,"journal":{"name":"In silico pharmacology","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2023-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10600089/pdf/","citationCount":"0","resultStr":"{\"title\":\"Drug repurposing by in silico prediction of cyclizine derivatives as antihyperlipemic agents.\",\"authors\":\"M S Afanamol,&nbsp;A Deepika Dinesh,&nbsp;K Shifa Ali,&nbsp;Ajeesh Vengamthodi,&nbsp;Arun Rasheed\",\"doi\":\"10.1007/s40203-023-00164-2\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Cardiovascular diseases are the primary factor for increased mortality rates around the world. Atherosclerosis brought on by high serum cholesterol can result in coronary heart disease (CHD). The risk of CHD is markedly reduced by lowering serum cholesterol levels. Scientists across the world are inventing new treatment regimens for lowering blood lipid levels. In this work, we repurposed the already established drugs, i.e., cyclizine derivatives as antihyperlipidemic agents. The repurposing was done based on the similarity of the selected cyclizine derivatives with the already established antihyperlipidemic drug, fenofibrate. Computational studies were performed and the 16 cyclizine derivatives docked against PPAR. alpha scored higher than fenofibrate. Lifarizine and medibazine outperform fenofibrate inmmgbsa. Fenofibrate, etodroxizine, meclizine, and cinnarizine had similar mmgbsa scores. The ADME properties of these compounds were performed and from that etodroxizine and levocetirizine were found to have better properties. The computational studies were performed using the Schrodinger software, maestro 12.8. The \\\"Protein Preparation Wizard\\\" module in the Maestro panel was used to create the protein structure and OPLS4 force field was used for energy minimization. The maestro builder panel's \\\"Ligprep\\\", \\\"Receptor Grid Generation\\\" and \\\"Ligand Docking\\\" modules were then used to prepare ligands, receptor grids and to perform docking respectively. MMGBSA was performed on the \\\"prime MMGBSA\\\" segment. Using the \\\"Qikprop\\\" setting in the maestro panel, a number of ADMET properties were predicted, and the program was run in default mode using vsgb as the solvation model.</p>\",\"PeriodicalId\":94038,\"journal\":{\"name\":\"In silico pharmacology\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2023-10-25\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10600089/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"In silico pharmacology\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1007/s40203-023-00164-2\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2023/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"In silico pharmacology","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1007/s40203-023-00164-2","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2023/1/1 0:00:00","PubModel":"eCollection","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

心血管疾病是世界各地死亡率上升的主要因素。高血清胆固醇引起的动脉粥样硬化可导致冠心病。通过降低血清胆固醇水平,冠心病的风险显著降低。世界各地的科学家正在发明降低血脂水平的新治疗方案。在这项工作中,我们重新利用已经建立的药物,即环嗪衍生物作为抗高血压药物。重新利用是基于所选环嗪衍生物与已经建立的抗高血压药物非诺贝特的相似性。进行了计算研究,并将16种环嗪衍生物与PPAR对接。阿尔法得分高于非诺贝特。利法利嗪和美地巴嗪在mgbsa中的表现优于非诺贝特。非诺贝特、依托屈嗪、美利嗪和桂利嗪的mmgbsa评分相似。对这些化合物进行了ADME性质的研究,发现依托屈嗪和左西替利嗪具有更好的性质。计算研究是使用薛定谔软件进行的,大师12.8。Maestro面板中的“蛋白质制备向导”模块用于创建蛋白质结构,OPLS4力场用于能量最小化。然后,大师建设者小组的“Ligprep”、“受体网格生成”和“配体对接”模块分别用于制备配体、受体网格和进行对接。MMGBSA是在“主要MMGBSA”段上执行的。使用maestro面板中的“Qikprop”设置,预测了许多ADMET特性,并使用vsgb作为溶剂化模型在默认模式下运行该程序。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Drug repurposing by in silico prediction of cyclizine derivatives as antihyperlipemic agents.

Cardiovascular diseases are the primary factor for increased mortality rates around the world. Atherosclerosis brought on by high serum cholesterol can result in coronary heart disease (CHD). The risk of CHD is markedly reduced by lowering serum cholesterol levels. Scientists across the world are inventing new treatment regimens for lowering blood lipid levels. In this work, we repurposed the already established drugs, i.e., cyclizine derivatives as antihyperlipidemic agents. The repurposing was done based on the similarity of the selected cyclizine derivatives with the already established antihyperlipidemic drug, fenofibrate. Computational studies were performed and the 16 cyclizine derivatives docked against PPAR. alpha scored higher than fenofibrate. Lifarizine and medibazine outperform fenofibrate inmmgbsa. Fenofibrate, etodroxizine, meclizine, and cinnarizine had similar mmgbsa scores. The ADME properties of these compounds were performed and from that etodroxizine and levocetirizine were found to have better properties. The computational studies were performed using the Schrodinger software, maestro 12.8. The "Protein Preparation Wizard" module in the Maestro panel was used to create the protein structure and OPLS4 force field was used for energy minimization. The maestro builder panel's "Ligprep", "Receptor Grid Generation" and "Ligand Docking" modules were then used to prepare ligands, receptor grids and to perform docking respectively. MMGBSA was performed on the "prime MMGBSA" segment. Using the "Qikprop" setting in the maestro panel, a number of ADMET properties were predicted, and the program was run in default mode using vsgb as the solvation model.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
Computational targeting of iron uptake proteins in Covid-19 induced mucormycosis to identify inhibitors via molecular dynamics, molecular mechanics and density function theory studies. Integrative multi-target analysis of Urtica dioica for gout arthritis treatment: a network pharmacology and clustering approach. Molecular docking and dynamics simulation of farnesol as a potential anticancer agent targeting mTOR pathway. In silico fragment-based design and pharmacophore modelling of therapeutics against dengue virus envelope protein. Anticipatory in silico vaccine designing based on specific antigenic epitopes from Streptococcus mutans against diabetic pathogenesis.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1