你能有多密集?被子植物叶脉密度的新的自动测量方法。

IF 2.7 3区 生物学 Q2 PLANT SCIENCES Applications in Plant Sciences Pub Date : 2023-10-31 DOI:10.1002/aps3.11551
Walton A. Green, Juan M. Losada
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引用次数: 1

摘要

前提:由于水分损失和二氧化碳同化之间的权衡,叶片蒸腾路径的传导性是光合作用的一个重要限制。紧密排列的叶脉对应于短路径和高同化率,而间隔较宽的叶脉则与较高的流动阻力和较低的最大光合速率有关。单位面积叶脉长度(VLA)已成为比较具有不同叶脉密度的叶片的标准指标;其测量通常利用具有变化量的人类输入的数字图像处理。方法和结果:在这里,我们提出了三种使用图像分析测量静脉密度的新方法,这些方法改进了当前可用的程序:(1)乳晕面积分布,(2)尺寸变换,和(3)距离图。每种替代方案都有不同的实际、统计和生物学局限性和优势。特别地,我们提倡静脉掩模的对数变换模态距离图作为估计器,以取代VLA作为静脉密度的标准度量。结论:这些方法提供了适用于高通量自动化的开源代码,通过将静脉密度的确定测量作为分布而不是点估计来改进VLA。结合图像质量和计算效率的进步,这些方法应该有助于阐明静脉密度的生理和进化意义。
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How dense can you be? New automatic measures of vein density in angiosperm leaves

Premise

Because of the trade-off between water loss and carbon dioxide assimilation, the conductivity of the transpiration path in a leaf is an important limit on photosynthesis. Closely packed veins correspond to short paths and high assimilation rates while widely spaced veins are associated with higher resistance to flow and lower maximum photosynthetic rates. Vein length per area (VLA) has become the standard metric for comparing leaves with different vein densities; its measurement typically utilizes digital image processing with varying amounts of human input.

Methods and Results

Here, we propose three new ways of measuring vein density using image analysis that improve on currently available procedures: (1) areole area distributions, (2) a sizing transform, and (3) a distance map. Each alternative has distinct practical, statistical, and biological limitations and advantages. In particular, we advocate the log-transformed modal distance map of a vein mask as an estimator to replace VLA as a standard metric for vein density.

Conclusions

These methods, for which open-source code appropriate for high-throughput automation is provided, improve on VLA by producing determinate measures of vein density as distributions rather than point estimates. Combined with advances in image quality and computational efficiency, these methods should help clarify the physiological and evolutionary significance of vein density.

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来源期刊
CiteScore
7.30
自引率
0.00%
发文量
50
审稿时长
12 weeks
期刊介绍: Applications in Plant Sciences (APPS) is a monthly, peer-reviewed, open access journal promoting the rapid dissemination of newly developed, innovative tools and protocols in all areas of the plant sciences, including genetics, structure, function, development, evolution, systematics, and ecology. Given the rapid progress today in technology and its application in the plant sciences, the goal of APPS is to foster communication within the plant science community to advance scientific research. APPS is a publication of the Botanical Society of America, originating in 2009 as the American Journal of Botany''s online-only section, AJB Primer Notes & Protocols in the Plant Sciences. APPS publishes the following types of articles: (1) Protocol Notes describe new methods and technological advancements; (2) Genomic Resources Articles characterize the development and demonstrate the usefulness of newly developed genomic resources, including transcriptomes; (3) Software Notes detail new software applications; (4) Application Articles illustrate the application of a new protocol, method, or software application within the context of a larger study; (5) Review Articles evaluate available techniques, methods, or protocols; (6) Primer Notes report novel genetic markers with evidence of wide applicability.
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