Lena Ostermeier , Moreno Ascani , Nicolás Gajardo-Parra , Gabriele Sadowski , Christoph Held , Roland Winter
{"title":"利用液-液相分离和体积调节来调节甲酸脱氢酶的酶活性。","authors":"Lena Ostermeier , Moreno Ascani , Nicolás Gajardo-Parra , Gabriele Sadowski , Christoph Held , Roland Winter","doi":"10.1016/j.bpc.2023.107128","DOIUrl":null,"url":null,"abstract":"<div><p><span>Engineering of reaction media is an exciting alternative for modulating kinetic properties<span> of biocatalytic reactions. We addressed the combined effect of an aqueous two-phase system (ATPS) and high hydrostatic pressure on the kinetics of the </span></span><span><em>Candida boidinii</em></span><span> formate dehydrogenase-catalyzed oxidation of formate to CO</span><sub>2</sub><span>. Pressurization was found to lead to an increase of the binding affinity (decrease of </span><em>K</em><sub>M</sub><span>, respectively) and a decrease of the turnover number, </span><em>k</em><sub>cat</sub><span>. The experimental approach was supported using thermodynamic modeling with the electrolyte Perturbed-Chain Statistical Associating Fluid Theory (ePC-SAFT) equation of state to predict the liquid-liquid phase separation and the molecular crowding effect of the ATPS on the kinetic properties. The ePC-SAFT was able to quantitatively predict the </span><em>K</em><sub>M</sub>-values of the substrate in both phases at 1 bar as well as up to a pressure of 1000 bar. The framework presented enables significant advances in bioprocess engineering, including the design of processes with significantly fewer experiments and trial-and-error approaches.</p></div>","PeriodicalId":8979,"journal":{"name":"Biophysical chemistry","volume":"304 ","pages":"Article 107128"},"PeriodicalIF":3.3000,"publicationDate":"2023-10-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Leveraging liquid-liquid phase separation and volume modulation to regulate the enzymatic activity of formate dehydrogenase\",\"authors\":\"Lena Ostermeier , Moreno Ascani , Nicolás Gajardo-Parra , Gabriele Sadowski , Christoph Held , Roland Winter\",\"doi\":\"10.1016/j.bpc.2023.107128\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p><span>Engineering of reaction media is an exciting alternative for modulating kinetic properties<span> of biocatalytic reactions. We addressed the combined effect of an aqueous two-phase system (ATPS) and high hydrostatic pressure on the kinetics of the </span></span><span><em>Candida boidinii</em></span><span> formate dehydrogenase-catalyzed oxidation of formate to CO</span><sub>2</sub><span>. Pressurization was found to lead to an increase of the binding affinity (decrease of </span><em>K</em><sub>M</sub><span>, respectively) and a decrease of the turnover number, </span><em>k</em><sub>cat</sub><span>. The experimental approach was supported using thermodynamic modeling with the electrolyte Perturbed-Chain Statistical Associating Fluid Theory (ePC-SAFT) equation of state to predict the liquid-liquid phase separation and the molecular crowding effect of the ATPS on the kinetic properties. The ePC-SAFT was able to quantitatively predict the </span><em>K</em><sub>M</sub>-values of the substrate in both phases at 1 bar as well as up to a pressure of 1000 bar. The framework presented enables significant advances in bioprocess engineering, including the design of processes with significantly fewer experiments and trial-and-error approaches.</p></div>\",\"PeriodicalId\":8979,\"journal\":{\"name\":\"Biophysical chemistry\",\"volume\":\"304 \",\"pages\":\"Article 107128\"},\"PeriodicalIF\":3.3000,\"publicationDate\":\"2023-10-29\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Biophysical chemistry\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0301462223001795\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biophysical chemistry","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0301462223001795","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
Leveraging liquid-liquid phase separation and volume modulation to regulate the enzymatic activity of formate dehydrogenase
Engineering of reaction media is an exciting alternative for modulating kinetic properties of biocatalytic reactions. We addressed the combined effect of an aqueous two-phase system (ATPS) and high hydrostatic pressure on the kinetics of the Candida boidinii formate dehydrogenase-catalyzed oxidation of formate to CO2. Pressurization was found to lead to an increase of the binding affinity (decrease of KM, respectively) and a decrease of the turnover number, kcat. The experimental approach was supported using thermodynamic modeling with the electrolyte Perturbed-Chain Statistical Associating Fluid Theory (ePC-SAFT) equation of state to predict the liquid-liquid phase separation and the molecular crowding effect of the ATPS on the kinetic properties. The ePC-SAFT was able to quantitatively predict the KM-values of the substrate in both phases at 1 bar as well as up to a pressure of 1000 bar. The framework presented enables significant advances in bioprocess engineering, including the design of processes with significantly fewer experiments and trial-and-error approaches.
期刊介绍:
Biophysical Chemistry publishes original work and reviews in the areas of chemistry and physics directly impacting biological phenomena. Quantitative analysis of the properties of biological macromolecules, biologically active molecules, macromolecular assemblies and cell components in terms of kinetics, thermodynamics, spatio-temporal organization, NMR and X-ray structural biology, as well as single-molecule detection represent a major focus of the journal. Theoretical and computational treatments of biomacromolecular systems, macromolecular interactions, regulatory control and systems biology are also of interest to the journal.