包含树突处理的神经场模型的数值研究

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Accounts of Chemical Research Pub Date : 2020-03-28 DOI:10.3934/jcd.2020011
D. Avitabile, S. Coombes, P. Lima
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引用次数: 2

摘要

我们考虑一个简单的神经场模型,其中状态变量是树突电压,其中体细胞形成一个连续的一维层。这种带有树突处理的神经场模型被表述为一个积分-微分方程。我们引入了一种逼近非局部模型解的计算方法,并用它对解剖连通性和非线性发射速率函数的神经生物学现实选择进行了数值模拟。对于时间离散,我们采用隐式-显式(IMEX)方案;空间离散化基于有限差分格式逼近扩散项,并使用梯形规则逼近描述模型中非局部相互作用的积分。我们证明了该格式在时间上是一阶的,在空间上是二阶的,并且如果预先计算了一个小的带状矩阵的分解,则可以有效地实现。通过验证的方式,我们将数值实现的输出与图灵模式开始的理论预测进行比较,并将其与特定选择的Heaviside发射速率的行进锋的速度和形状进行比较。我们发现理论和数值模拟非常吻合。
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Numerical investigation of a neural field model including dendritic processing
We consider a simple neural field model in which the state variable is dendritic voltage, and in which somas form a continuous one-dimensional layer. This neural field model with dendritic processing is formulated as an integro-differential equation. We introduce a computational method for approximating solutions to this nonlocal model, and use it to perform numerical simulations for neuro-biologically realistic choices of anatomical connectivity and nonlinear firing rate function. For the time discretisation we adopt an Implicit-Explicit (IMEX) scheme; the space discretisation is based on a finite-difference scheme to approximate the diffusion term and uses the trapezoidal rule to approximate integrals describing the nonlocal interactions in the model. We prove that the scheme is of first-order in time and second order in space, and can be efficiently implemented if the factorisation of a small, banded matrix is precomputed. By way of validation we compare the outputs of a numerical realisation to theoretical predictions for the onset of a Turing pattern, and to the speed and shape of a travelling front for a specific choice of Heaviside firing rate. We find that theory and numerical simulations are in excellent agreement.
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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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