小鼠肌囊虫凝集素SML-2的低分辨率从头分期。

Jürgen J. Müller, N. Lunina, A. Urzhumtsev, E. Weckert, U. Heinemann, V. Lunin
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引用次数: 3

摘要

凝集素SML-2的结构分析在采用标准晶体相法时存在困难。基于连通性的从头算相位方法允许计算16 a分辨率的傅立叶合成和初级结构信息的推导。结果发现,SML-2晶体在单晶的不对称部分有3个二聚体,由接近平移(0,0,1 /3)的非晶体对称连接。SML-2和半乳糖共晶在N(2)低温流中退火过程中观察到从原始P2(1)2(1)2(1) 2(1)到c中心C222(1)的空间群转变。相关的填充考虑预测了SML-2分子在四边形单元胞中的可能排列。多种非晶体对称性和晶体形式为进一步的图像改进提供了基础。
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Low-resolution ab initio phasing of Sarcocystis muris lectin SML-2.
Structural analysis of the lectin SML-2 faced difficulties when applying standard crystallographic phasing methods. The connectivity-based ab initio phasing method allowed the computation of a 16 A resolution Fourier synthesis and the derivation of primary structural information. It was found that SML-2 crystals have three dimers in the asymmetric part of the unit cell linked by a noncrystallographic symmetry close to translation by (0, 0, 1/3). A clear identification of the noncrystallographic twofold axis explains the space-group transformation from the primitive P2(1)2(1)2(1) to the C-centred C222(1) observed during annealing procedures within an N(2) cryostream for cocrystals of SML-2 and galactose. Related packing considerations predict a possible arrangement of SML-2 molecules in a tetragonal unit cell. Multiple noncrystallographic symmetries and crystal forms provide a basis for further image improvements.
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来源期刊
自引率
13.60%
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0
审稿时长
3 months
期刊介绍: Acta Crystallographica Section D welcomes the submission of articles covering any aspect of structural biology, with a particular emphasis on the structures of biological macromolecules or the methods used to determine them. Reports on new structures of biological importance may address the smallest macromolecules to the largest complex molecular machines. These structures may have been determined using any structural biology technique including crystallography, NMR, cryoEM and/or other techniques. The key criterion is that such articles must present significant new insights into biological, chemical or medical sciences. The inclusion of complementary data that support the conclusions drawn from the structural studies (such as binding studies, mass spectrometry, enzyme assays, or analysis of mutants or other modified forms of biological macromolecule) is encouraged. Methods articles may include new approaches to any aspect of biological structure determination or structure analysis but will only be accepted where they focus on new methods that are demonstrated to be of general applicability and importance to structural biology. Articles describing particularly difficult problems in structural biology are also welcomed, if the analysis would provide useful insights to others facing similar problems.
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