序列和测序器

IF 0.7 3区 哲学 Q2 HISTORY & PHILOSOPHY OF SCIENCE Historical Studies in the Natural Sciences Pub Date : 2022-06-01 DOI:10.1525/hsns.2022.52.3.277
R. Leng, G. Viry, Miguel García-Sancho, James W. E. Lowe, Mark Wong, N. Vermeulen
{"title":"序列和测序器","authors":"R. Leng, G. Viry, Miguel García-Sancho, James W. E. Lowe, Mark Wong, N. Vermeulen","doi":"10.1525/hsns.2022.52.3.277","DOIUrl":null,"url":null,"abstract":"This special issue on sequences and sequencers uses new analytical approaches to re-assess the history of genomics. Historical attention has largely focused on a few central characters and institutions: those that participated in the Human Genome Project (HGP), especially its final stages. Our analysis—based on an assessment of almost 13.5 million DNA sequence submissions and 30,000 publications of human, yeast, and pig DNA sequences—followed overlapping chronologies starting before and finishing after the concerted efforts to sequence the genomes of each species: 1980 to 2000 in yeast, 1985 to 2005 for the human, and 1990 to 2015 for the pig. Our main conclusion is that when broader sequencing practices—especially those addressed to nonhuman species—are taken into account, the large-scale center model that characterized the organization of the HGP falls short in representing genomics as a whole. Instead of taking the HGP as a model, we describe an iterative process in which the practices of sequence submission and publication were entangled. Analysis of co-authorship networks between institutions derived from our data shows how linked sequence submission and publication were to medical, biochemical, and agricultural research. Our analysis thus reveals the utility of big data and mixed-methods approaches for addressing science as a multidimensional endeavor with a history shaped by co-constitutive, synchronic interactions among different elements—such as communities, species, and disciplines—as much as diachronic trajectories over time. This perspective enables us to better capture interdisciplinary and interspecies work, and offers a more fluid portrayal of the connections between scientific practices and agricultural, industrial, and medical goals. This essay is part of a special issue entitled The Sequences and the Sequencers: A New Approach to Investigating the Emergence of Yeast, Human, and Pig Genomics, edited by Michael García-Sancho and James Lowe.","PeriodicalId":56130,"journal":{"name":"Historical Studies in the Natural Sciences","volume":"22 1","pages":""},"PeriodicalIF":0.7000,"publicationDate":"2022-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"The Sequences and the Sequencers\",\"authors\":\"R. Leng, G. Viry, Miguel García-Sancho, James W. E. Lowe, Mark Wong, N. Vermeulen\",\"doi\":\"10.1525/hsns.2022.52.3.277\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"This special issue on sequences and sequencers uses new analytical approaches to re-assess the history of genomics. Historical attention has largely focused on a few central characters and institutions: those that participated in the Human Genome Project (HGP), especially its final stages. Our analysis—based on an assessment of almost 13.5 million DNA sequence submissions and 30,000 publications of human, yeast, and pig DNA sequences—followed overlapping chronologies starting before and finishing after the concerted efforts to sequence the genomes of each species: 1980 to 2000 in yeast, 1985 to 2005 for the human, and 1990 to 2015 for the pig. Our main conclusion is that when broader sequencing practices—especially those addressed to nonhuman species—are taken into account, the large-scale center model that characterized the organization of the HGP falls short in representing genomics as a whole. Instead of taking the HGP as a model, we describe an iterative process in which the practices of sequence submission and publication were entangled. Analysis of co-authorship networks between institutions derived from our data shows how linked sequence submission and publication were to medical, biochemical, and agricultural research. Our analysis thus reveals the utility of big data and mixed-methods approaches for addressing science as a multidimensional endeavor with a history shaped by co-constitutive, synchronic interactions among different elements—such as communities, species, and disciplines—as much as diachronic trajectories over time. This perspective enables us to better capture interdisciplinary and interspecies work, and offers a more fluid portrayal of the connections between scientific practices and agricultural, industrial, and medical goals. This essay is part of a special issue entitled The Sequences and the Sequencers: A New Approach to Investigating the Emergence of Yeast, Human, and Pig Genomics, edited by Michael García-Sancho and James Lowe.\",\"PeriodicalId\":56130,\"journal\":{\"name\":\"Historical Studies in the Natural Sciences\",\"volume\":\"22 1\",\"pages\":\"\"},\"PeriodicalIF\":0.7000,\"publicationDate\":\"2022-06-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Historical Studies in the Natural Sciences\",\"FirstCategoryId\":\"98\",\"ListUrlMain\":\"https://doi.org/10.1525/hsns.2022.52.3.277\",\"RegionNum\":3,\"RegionCategory\":\"哲学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"HISTORY & PHILOSOPHY OF SCIENCE\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Historical Studies in the Natural Sciences","FirstCategoryId":"98","ListUrlMain":"https://doi.org/10.1525/hsns.2022.52.3.277","RegionNum":3,"RegionCategory":"哲学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"HISTORY & PHILOSOPHY OF SCIENCE","Score":null,"Total":0}
引用次数: 0

摘要

这个关于序列和测序的特刊使用新的分析方法来重新评估基因组学的历史。历史上的注意力主要集中在几个核心人物和机构上:那些参与了人类基因组计划(HGP)的人,尤其是它的最后阶段。我们的分析基于对近1350万份提交的DNA序列和3万份人类、酵母和猪DNA序列的出版物的评估,遵循重叠的时间顺序,从每个物种基因组测序的前后开始:酵母是1980年至2000年,人类是1985年至2005年,猪是1990年至2015年。我们的主要结论是,当更广泛的测序实践——特别是那些针对非人类物种的测序实践——被考虑在内时,人类基因组组织的大规模中心模型在代表基因组学整体方面存在不足。我们没有将HGP作为模型,而是描述了一个序列提交和发表实践相互纠缠的迭代过程。根据我们的数据对机构之间的合著者网络进行分析,显示了链接序列的提交和发表是如何与医学、生物化学和农业研究相关的。因此,我们的分析揭示了大数据和混合方法的效用,将科学作为一种多维努力,其历史由不同元素(如社区、物种和学科)之间的共构、共时相互作用形成,同时也随着时间的推移呈现出历时性轨迹。这种观点使我们能够更好地捕捉跨学科和跨物种的工作,并为科学实践与农业、工业和医疗目标之间的联系提供了更流畅的描述。这篇文章是由Michael García-Sancho和James Lowe编辑的题为“序列和测序者:研究酵母、人类和猪基因组学出现的新方法”的特刊的一部分。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
The Sequences and the Sequencers
This special issue on sequences and sequencers uses new analytical approaches to re-assess the history of genomics. Historical attention has largely focused on a few central characters and institutions: those that participated in the Human Genome Project (HGP), especially its final stages. Our analysis—based on an assessment of almost 13.5 million DNA sequence submissions and 30,000 publications of human, yeast, and pig DNA sequences—followed overlapping chronologies starting before and finishing after the concerted efforts to sequence the genomes of each species: 1980 to 2000 in yeast, 1985 to 2005 for the human, and 1990 to 2015 for the pig. Our main conclusion is that when broader sequencing practices—especially those addressed to nonhuman species—are taken into account, the large-scale center model that characterized the organization of the HGP falls short in representing genomics as a whole. Instead of taking the HGP as a model, we describe an iterative process in which the practices of sequence submission and publication were entangled. Analysis of co-authorship networks between institutions derived from our data shows how linked sequence submission and publication were to medical, biochemical, and agricultural research. Our analysis thus reveals the utility of big data and mixed-methods approaches for addressing science as a multidimensional endeavor with a history shaped by co-constitutive, synchronic interactions among different elements—such as communities, species, and disciplines—as much as diachronic trajectories over time. This perspective enables us to better capture interdisciplinary and interspecies work, and offers a more fluid portrayal of the connections between scientific practices and agricultural, industrial, and medical goals. This essay is part of a special issue entitled The Sequences and the Sequencers: A New Approach to Investigating the Emergence of Yeast, Human, and Pig Genomics, edited by Michael García-Sancho and James Lowe.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Historical Studies in the Natural Sciences
Historical Studies in the Natural Sciences 社会科学-科学史与科学哲学
CiteScore
1.00
自引率
0.00%
发文量
24
审稿时长
>12 weeks
期刊介绍: Explore the fascinating world of Historical Studies in the Natural Sciences, a journal that reveals the history of science as it has developed since the 18th century. HSNS offers in-depth articles on a wide range of scientific fields, their social and cultural histories and supporting institutions, including astronomy, geology, physics, genetics, natural history, chemistry, meteorology, and molecular biology. Widely regarded as a leading journal in the historiography of science and technology, HSNS increased its publication to five times per year in 2012 to expand its roster of pioneering articles and notable reviews by the most influential writers in the field.
期刊最新文献
Oceans of Ooze Discoverer and Methodologist Coded Objects Between the Mountain, the Meadow, the Calm, and the Storm Gaia’s Tissue
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1