利用 BIGA 云计算平台分析 GWAS 摘要统计中的双变量跨性状遗传结构。

Yujue Li, Fei Xue, Bingxuan Li, Yilin Yang, Zirui Fan, Juan Shu, Xiaochen Yang, Xiyao Wang, Jinjie Lin, Carlos Copana, Bingxin Zhao
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引用次数: 0

摘要

随着大规模生物库提供越来越多的深度表型和基因组数据,全基因组关联研究(GWAS)正在迅速揭示各种复杂性状和疾病背后的遗传结构。全基因组关联研究出版物通常会公开其摘要级数据(全基因组关联研究摘要统计),以便进一步探索从不同研究和队列中收集的表型之间的遗传重叠。然而,系统分析数千种表型的高维 GWAS 摘要统计在逻辑上具有挑战性,在计算上要求也很高。在本文中,我们介绍了 BIGA ( https://bigagwas.org/ ),该网站旨在提供统一的数据分析管道和处理过的数据资源,用于使用 GWAS 摘要统计进行跨性状遗传结构分析。我们开发了一个在云计算平台上实现统计遗传学工具的框架,并结合了广泛的 GWAS 数据资源。通过 BIGA,用户可以上传数据、提交作业和分享结果,为研究界提供了一个整合 GWAS 数据和产生新见解的便捷工具。
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Analyzing bivariate cross-trait genetic architecture in GWAS summary statistics with the BIGA cloud computing platform.

As large-scale biobanks provide increasing access to deep phenotyping and genomic data, genome-wide association studies (GWAS) are rapidly uncovering the genetic architecture behind various complex traits and diseases. GWAS publications typically make their summary-level data (GWAS summary statistics) publicly available, enabling further exploration of genetic overlaps between phenotypes gathered from different studies and cohorts. However, systematically analyzing high-dimensional GWAS summary statistics for thousands of phenotypes can be both logistically challenging and computationally demanding. In this paper, we introduce BIGA (https://bigagwas.org/), a website that aims to offer unified data analysis pipelines and processed data resources for cross-trait genetic architecture analyses using GWAS summary statistics. We have developed a framework to implement statistical genetics tools on a cloud computing platform, combined with extensive curated GWAS data resources. Through BIGA, users can upload data, submit jobs, and share results, providing the research community with a convenient tool for consolidating GWAS data and generating new insights.

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