计算贝叶斯推理的离散梯度

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Accounts of Chemical Research Pub Date : 2019-03-01 DOI:10.3934/jcd.2019019
S. Pathiraja, S. Reich
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引用次数: 18

摘要

本文从贝叶斯推理的数值时间步进出发,研究了连续时间公式的梯度流结构。我们关注两个特定的例子,即连续时间系综卡尔曼-布西滤波器和与布朗动力学相关的福克-普朗克方程的粒子离散化。这两种形式都可能导致刚性微分方程,需要特殊的数值方法才能有效地进行数值实现。我们将离散梯度方法与潜在贝叶斯推理问题的替代半隐式和其他迭代实现进行比较。
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Discrete gradients for computational Bayesian inference
In this paper, we exploit the gradient flow structure of continuous-time formulations of Bayesian inference in terms of their numerical time-stepping. We focus on two particular examples, namely, the continuous-time ensemble Kalman-Bucy filter and a particle discretisation of the Fokker-Planck equation associated to Brownian dynamics. Both formulations can lead to stiff differential equations which require special numerical methods for their efficient numerical implementation. We compare discrete gradient methods to alternative semi-implicit and other iterative implementations of the underlying Bayesian inference problems.
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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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