{"title":"在洪水中出现。理查德·e·迪克森著。桑德兰,质量。: Sinauer Associates, Inc., 2005307页。价格(平装本)36.95美元。ISBN 0-87893-168-6。","authors":"W. Hunter","doi":"10.1107/S0907444907013558","DOIUrl":null,"url":null,"abstract":"First you should know something of the author. Richard ‘Dick’ Dickerson was a participant in some of the early computational crystallography on myoglobin whilst a post-doc in Cambridge. This, when a significant amount of the world wide available computing resource was devoted to crystallographic calculations, was adventurous. The successful experience and now knowing the difference between protons and proteins set him on the career path during which he has investigated the structural biology of cytochrome proteins and their molecular evolution, protein–nucleic acid associations and perhaps the work with which he is most closely associated, the intricacies of DNA structure and interactions with drugs. So, with his credentials established for the younger readers, let us begin. Dick Dickerson identifies the period between 1933 and 1963 as the genesis of structural molecular biology. He then tells the story of how protein structure came to be investigated by fibre diffraction, and modelled and then how the models could be tested. How DNA came into the limelight and of the race to produce the correct model of this macromolecule. Of how single crystal diffraction methods progressed and eventually revealed the structures of myoglobin and hemoglobin. And then of how, following a period of consolidation (drought) the field of structural biology took off. Perhaps this sounds like a nice little book reviewing an interesting period in science. It most certainly is not. This is a book about important science and real people who shaped a cornerstone of modern biological, chemical and biomedical research. We often take things for granted especially in our science, as progress appears relentless. There is a risk that in our diet of facts the methods and reasoning, occasional serendipity and fate, that allowed to us obtain the facts in the first place are lost. Often, in the dryness of a scientific publication, where all aspects are clearly laid out and explained, what is missing is the sometimes chaotic reality of how and why things actually happened. What factors influenced decisions? So, with respect to structural biology some of the answers are to be found here as Dick takes us on a journey that evolves from Astbury working in Leeds, down to Kings College in London and up to Cambridge, and across the Atlantic a couple of times. The story involves a sickbed in Oxford, slabs of whale meat, conferences organised to coincide with good skiing in Austria, the speed of an owls blink, arson and sinister McCarthyism. The story encompasses chemistry, physics and biology with a little bit of politics and sociology mixed in. Human strengths are evident and some frailties are exposed; as in every aspect of life these can determine success or failure and often how contributions are remembered. The author’s admiration for the many of the contributors to the story shines through. There are no villains but there are examples of arrogance, ignorance, at least one ‘monstrous ego’, and thankfully several heroes of whom Max Perutz is perhaps foremost (my bias I suppose). Max Perutz does not get all the honours, which are shared with Pauling and Corey, Watson and Crick, and of course Bragg. Then there are the molecules themselves, which in the first place caught the attention and imagination of these talented individuals. The early attempts to address an important issue of how to represent such complex molecules are interesting to see. The images of the early models stirred my memory of the model room at the Medical Research Council Laboratory of Molecular Biology and it is delightful to see reproduction of the beautiful images produced by Irving Geis. Different people may put the emphasis elsewhere, I for example would consider Jack Sumner’s work to have been worth more details (he is mentioned) but Dick explains what is included and justifies why. In places this is a very personal account, which serves as a positive factor in making the story and the players accessible. I like the style of incorporating some of the original literature. The strategy of placing the original papers alongside the story works well. I have some of these papers in my reprint collection, which together with early reprints on lysozyme helped educate me, and I have no doubt that other readers will find them interesting. There is clarity in the explanation of diffraction without mathematics. This may usefully help some readers understand how the important scientific results were derived. The one area that, for me, did not work were the study questions at the end of the chapters together with answers given in a section towards the end of the book. The book may have been delivered because of course work at UCLA but it is unlikely to be used to supplement other courses in quite the same way. However, the incorporation of additional details or anecdotes, as found here, would certainly liven up the driest of lectures. My advice is read this book; there is material here that will both captivate and educate. Thank you Dick.","PeriodicalId":6895,"journal":{"name":"Acta Crystallographica Section D: Biological Crystallography","volume":null,"pages":null},"PeriodicalIF":2.2000,"publicationDate":"2007-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":"{\"title\":\"Present at the Flood. By Richard E. Dickerson. Sunderland, Mass.: Sinauer Associates, Inc., 2005. Pp. 307. Price (paperback) US$ 36.95. ISBN 0-87893-168-6.\",\"authors\":\"W. Hunter\",\"doi\":\"10.1107/S0907444907013558\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"First you should know something of the author. Richard ‘Dick’ Dickerson was a participant in some of the early computational crystallography on myoglobin whilst a post-doc in Cambridge. This, when a significant amount of the world wide available computing resource was devoted to crystallographic calculations, was adventurous. The successful experience and now knowing the difference between protons and proteins set him on the career path during which he has investigated the structural biology of cytochrome proteins and their molecular evolution, protein–nucleic acid associations and perhaps the work with which he is most closely associated, the intricacies of DNA structure and interactions with drugs. So, with his credentials established for the younger readers, let us begin. Dick Dickerson identifies the period between 1933 and 1963 as the genesis of structural molecular biology. He then tells the story of how protein structure came to be investigated by fibre diffraction, and modelled and then how the models could be tested. How DNA came into the limelight and of the race to produce the correct model of this macromolecule. Of how single crystal diffraction methods progressed and eventually revealed the structures of myoglobin and hemoglobin. And then of how, following a period of consolidation (drought) the field of structural biology took off. Perhaps this sounds like a nice little book reviewing an interesting period in science. It most certainly is not. This is a book about important science and real people who shaped a cornerstone of modern biological, chemical and biomedical research. We often take things for granted especially in our science, as progress appears relentless. There is a risk that in our diet of facts the methods and reasoning, occasional serendipity and fate, that allowed to us obtain the facts in the first place are lost. Often, in the dryness of a scientific publication, where all aspects are clearly laid out and explained, what is missing is the sometimes chaotic reality of how and why things actually happened. What factors influenced decisions? So, with respect to structural biology some of the answers are to be found here as Dick takes us on a journey that evolves from Astbury working in Leeds, down to Kings College in London and up to Cambridge, and across the Atlantic a couple of times. The story involves a sickbed in Oxford, slabs of whale meat, conferences organised to coincide with good skiing in Austria, the speed of an owls blink, arson and sinister McCarthyism. The story encompasses chemistry, physics and biology with a little bit of politics and sociology mixed in. Human strengths are evident and some frailties are exposed; as in every aspect of life these can determine success or failure and often how contributions are remembered. The author’s admiration for the many of the contributors to the story shines through. There are no villains but there are examples of arrogance, ignorance, at least one ‘monstrous ego’, and thankfully several heroes of whom Max Perutz is perhaps foremost (my bias I suppose). Max Perutz does not get all the honours, which are shared with Pauling and Corey, Watson and Crick, and of course Bragg. Then there are the molecules themselves, which in the first place caught the attention and imagination of these talented individuals. The early attempts to address an important issue of how to represent such complex molecules are interesting to see. The images of the early models stirred my memory of the model room at the Medical Research Council Laboratory of Molecular Biology and it is delightful to see reproduction of the beautiful images produced by Irving Geis. Different people may put the emphasis elsewhere, I for example would consider Jack Sumner’s work to have been worth more details (he is mentioned) but Dick explains what is included and justifies why. In places this is a very personal account, which serves as a positive factor in making the story and the players accessible. I like the style of incorporating some of the original literature. The strategy of placing the original papers alongside the story works well. I have some of these papers in my reprint collection, which together with early reprints on lysozyme helped educate me, and I have no doubt that other readers will find them interesting. There is clarity in the explanation of diffraction without mathematics. This may usefully help some readers understand how the important scientific results were derived. The one area that, for me, did not work were the study questions at the end of the chapters together with answers given in a section towards the end of the book. The book may have been delivered because of course work at UCLA but it is unlikely to be used to supplement other courses in quite the same way. However, the incorporation of additional details or anecdotes, as found here, would certainly liven up the driest of lectures. My advice is read this book; there is material here that will both captivate and educate. 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引用次数: 1
摘要
首先,你应该对作者有所了解。理查德·迪克·迪克森(Richard Dick Dickerson)在剑桥做博士后时,参与了肌红蛋白的一些早期计算晶体学研究。当世界范围内大量可用的计算资源用于晶体学计算时,这是冒险的。成功的经验和现在对质子和蛋白质之间差异的了解使他走上了职业道路,在此期间,他研究了细胞色素蛋白的结构生物学及其分子进化,蛋白质与核酸的关联,以及可能与他最密切相关的工作,DNA结构的复杂性以及与药物的相互作用。因此,在为年轻读者建立了他的资历之后,让我们开始吧。迪克·迪克森认为1933年到1963年这段时间是结构分子生物学的起源。然后,他讲述了如何通过纤维衍射来研究蛋白质结构,并建立模型,然后如何对模型进行测试的故事。DNA是如何成为人们关注的焦点,又是如何成为制造这种大分子正确模型的竞赛的焦点。单晶衍射方法如何发展并最终揭示了肌红蛋白和血红蛋白的结构。然后,在经历了一段时间的巩固(干旱)之后,结构生物学领域开始腾飞。也许这听起来像是一本不错的小书,回顾了一个有趣的科学时期。它肯定不是。这是一本关于重要科学和塑造现代生物、化学和生物医学研究基石的真实人物的书。我们常常认为事情是理所当然的,尤其是在科学领域,因为进步似乎是无情的。有一种风险是,在我们获取事实的过程中,最初让我们获得事实的方法和推理、偶尔的意外发现和命运已经消失了。通常,在枯燥无味的科学出版物中,所有方面都被清楚地列出和解释,而缺少的是有时混乱的事实,即事情是如何以及为什么发生的。什么因素影响决策?所以,关于结构生物学的一些答案就在这里,迪克带我们踏上了一段旅程,从在利兹的阿斯特伯里工作,到伦敦的国王学院,再到剑桥,几次跨越大西洋。这个故事涉及到牛津的一张病床、大块大块的鲸鱼肉、在奥地利滑雪时组织的会议、猫头鹰眨眼的速度、纵火和邪恶的麦卡锡主义。这个故事涵盖了化学、物理和生物,并掺杂了一点政治和社会学。人类的力量是显而易见的,但也暴露了一些弱点;就像在生活的各个方面一样,这些可以决定成功或失败,也常常决定人们如何记住自己的贡献。作者对这个故事的许多贡献者的钦佩溢于言表。没有坏人,但有傲慢、无知的例子,至少有一个“可怕的自我”,谢天谢地,还有几个英雄,其中马克斯·佩鲁茨可能是最重要的(我想是我的偏见)。马克斯·佩鲁茨并没有得到所有的荣誉,鲍林、科里、沃森和克里克,当然还有布拉格都得到了这些荣誉。然后是分子本身,它们首先引起了这些天才的注意和想象。早期试图解决如何表示如此复杂的分子这一重要问题的尝试很有趣。早期模型的图像唤起了我对医学研究委员会分子生物学实验室的模型室的记忆,看到欧文·盖斯制作的美丽图像的复制是令人愉快的。不同的人可能会把重点放在其他地方,例如,我认为杰克萨姆纳的工作值得更多的细节(他被提到),但迪克解释了包括什么,并证明了为什么。在某些情况下,这是一种非常私人的叙述,这是创造故事和玩家的积极因素。我喜欢融入一些原创文学的风格。把原稿和故事放在一起的策略效果很好。我在我的再版集里有一些这样的论文,连同早期关于溶菌酶的再版对我有很大的帮助,我毫不怀疑其他读者会觉得它们很有趣。不用数学也能清楚地解释衍射。这可能有助于一些读者理解这些重要的科学结果是如何得出的。对我来说,有一个地方行不通,那就是章节末尾的学习问题以及书末尾部分给出的答案。这本书可能是由于加州大学洛杉矶分校的课程而交付的,但它不太可能以完全相同的方式用于补充其他课程。然而,在这里发现的额外细节或轶事的结合,肯定会使最枯燥的讲座活跃起来。 我的建议是读这本书;这里有既吸引人又有教育意义的材料。谢谢你迪克。
Present at the Flood. By Richard E. Dickerson. Sunderland, Mass.: Sinauer Associates, Inc., 2005. Pp. 307. Price (paperback) US$ 36.95. ISBN 0-87893-168-6.
First you should know something of the author. Richard ‘Dick’ Dickerson was a participant in some of the early computational crystallography on myoglobin whilst a post-doc in Cambridge. This, when a significant amount of the world wide available computing resource was devoted to crystallographic calculations, was adventurous. The successful experience and now knowing the difference between protons and proteins set him on the career path during which he has investigated the structural biology of cytochrome proteins and their molecular evolution, protein–nucleic acid associations and perhaps the work with which he is most closely associated, the intricacies of DNA structure and interactions with drugs. So, with his credentials established for the younger readers, let us begin. Dick Dickerson identifies the period between 1933 and 1963 as the genesis of structural molecular biology. He then tells the story of how protein structure came to be investigated by fibre diffraction, and modelled and then how the models could be tested. How DNA came into the limelight and of the race to produce the correct model of this macromolecule. Of how single crystal diffraction methods progressed and eventually revealed the structures of myoglobin and hemoglobin. And then of how, following a period of consolidation (drought) the field of structural biology took off. Perhaps this sounds like a nice little book reviewing an interesting period in science. It most certainly is not. This is a book about important science and real people who shaped a cornerstone of modern biological, chemical and biomedical research. We often take things for granted especially in our science, as progress appears relentless. There is a risk that in our diet of facts the methods and reasoning, occasional serendipity and fate, that allowed to us obtain the facts in the first place are lost. Often, in the dryness of a scientific publication, where all aspects are clearly laid out and explained, what is missing is the sometimes chaotic reality of how and why things actually happened. What factors influenced decisions? So, with respect to structural biology some of the answers are to be found here as Dick takes us on a journey that evolves from Astbury working in Leeds, down to Kings College in London and up to Cambridge, and across the Atlantic a couple of times. The story involves a sickbed in Oxford, slabs of whale meat, conferences organised to coincide with good skiing in Austria, the speed of an owls blink, arson and sinister McCarthyism. The story encompasses chemistry, physics and biology with a little bit of politics and sociology mixed in. Human strengths are evident and some frailties are exposed; as in every aspect of life these can determine success or failure and often how contributions are remembered. The author’s admiration for the many of the contributors to the story shines through. There are no villains but there are examples of arrogance, ignorance, at least one ‘monstrous ego’, and thankfully several heroes of whom Max Perutz is perhaps foremost (my bias I suppose). Max Perutz does not get all the honours, which are shared with Pauling and Corey, Watson and Crick, and of course Bragg. Then there are the molecules themselves, which in the first place caught the attention and imagination of these talented individuals. The early attempts to address an important issue of how to represent such complex molecules are interesting to see. The images of the early models stirred my memory of the model room at the Medical Research Council Laboratory of Molecular Biology and it is delightful to see reproduction of the beautiful images produced by Irving Geis. Different people may put the emphasis elsewhere, I for example would consider Jack Sumner’s work to have been worth more details (he is mentioned) but Dick explains what is included and justifies why. In places this is a very personal account, which serves as a positive factor in making the story and the players accessible. I like the style of incorporating some of the original literature. The strategy of placing the original papers alongside the story works well. I have some of these papers in my reprint collection, which together with early reprints on lysozyme helped educate me, and I have no doubt that other readers will find them interesting. There is clarity in the explanation of diffraction without mathematics. This may usefully help some readers understand how the important scientific results were derived. The one area that, for me, did not work were the study questions at the end of the chapters together with answers given in a section towards the end of the book. The book may have been delivered because of course work at UCLA but it is unlikely to be used to supplement other courses in quite the same way. However, the incorporation of additional details or anecdotes, as found here, would certainly liven up the driest of lectures. My advice is read this book; there is material here that will both captivate and educate. Thank you Dick.
期刊介绍:
Acta Crystallographica Section D welcomes the submission of articles covering any aspect of structural biology, with a particular emphasis on the structures of biological macromolecules or the methods used to determine them.
Reports on new structures of biological importance may address the smallest macromolecules to the largest complex molecular machines. These structures may have been determined using any structural biology technique including crystallography, NMR, cryoEM and/or other techniques. The key criterion is that such articles must present significant new insights into biological, chemical or medical sciences. The inclusion of complementary data that support the conclusions drawn from the structural studies (such as binding studies, mass spectrometry, enzyme assays, or analysis of mutants or other modified forms of biological macromolecule) is encouraged.
Methods articles may include new approaches to any aspect of biological structure determination or structure analysis but will only be accepted where they focus on new methods that are demonstrated to be of general applicability and importance to structural biology. Articles describing particularly difficult problems in structural biology are also welcomed, if the analysis would provide useful insights to others facing similar problems.