基于分子对接的部分有机化合物和抗病毒药物抗COVID-19潜在活性研究

T. Pal, S. Paul, J. Hossen
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摘要

当前的COVID-19疫情威胁着全球公共卫生,世卫组织宣布这是一场全球大流行。目前还没有发现有效的口服药物治疗冠状病毒。为了找到有效的药物,我们将23个化合物停靠在冠状病毒6LU7蛋白的活性位点内。其中,一些抗病毒药物对冠状病毒的治疗效果非常好,可能被认为是治疗COVID-19疾病的潜在药物。分子对接研究表明,从nishinda (Vitex sp.)中发现的异牡荆素和芹菜素以及我们新制备的化合物(E)-4-((3,5-二溴-2-羟基苄基)氨基)- n -(5-甲基异恶唑-3-酰基)苯磺酰胺与达诺韦、洛匹那韦、瑞德西韦和利托那韦相比具有优异的活性。异牡荆新与冠状病毒蛋白的结合亲和力为-8.00 kcal/mol,而磺胺类化合物与冠状病毒蛋白的结合亲和力为-7.30 kcal/mol,与其他抗病毒药物相比具有较高的结合亲和力。此外,还对合成的磺胺类化合物的吸收、分布、代谢、排泄及毒性进行了研究。该化合物具有良好的药物样性质和人体口服吸收百分比。并且在毒理学风险评估中发现其对人体是安全的。
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Investigation of Potential Activity of Some Organic Compounds and Antiviral Drugs Against COVID-19 Based on Molecular Docking
The current outbreak of the COVID-19 threatens public health worldwide, and WHO declares this as a global pandemic. Effective oral drug therapy against coronavirus did not discover yet. In order to find out an effective drug, we docked 23 compounds within the active site of 6LU7 protein of coronavirus. Among all, some antivirals exhibited very promising results against coronavirus and may be considered as a potential drug for treating COVID-19 disease. Molecular docking study revealed that isovitexin and apigenin found from nishinda (Vitex sp.) as well as our newly prepared compound (E)-4-((3,5-dibromo-2-hydroxybenzylidene)amino)-N-(5-methylisoxazol-3-yl)benzenesulfonamide showed exce-llent activity as compared to danoprevir, lopinavir, remdesivir and ritonavir. Isovitexin showed a binding affinity of -8.00 kcal/mol, whereas the binding affinity of sulfonamide compound with the coronavirus protein was -7.30 kcal/mol, which was relatively high compared to other antiviral drugs. Besides, the synthesized sulfonamide compound's absorption, distribution, metabolism, excretion, and toxicity profiles were also carried out. The compound showed excellent drug-like properties and percentage of human oral absorption. Moreover, it was found to be safe for the human body in toxicological risk assessment.
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