利用线粒体COI基因部分序列对带状鱼进行分子鉴定

Sristy Saha, Sawda Jaman, Hafisha Khatun Anee, Ashfaqul Muid Khandaker, M. S. Alam, R. Begum
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摘要

干鱼在许多孟加拉国人的菜单上被认为是一道美味佳肴。经济上最重要的海洋和淡水干鱼是带鱼、孟买鸭、橄榄倒钩、鲳鱼、虾等。本研究从考克斯巴扎尔采集新鲜带鱼样本,经形态学鉴定为带鱼。收集到的鱼通过使用线粒体COI基因(细胞色素c氧化酶亚基I)的分子技术进行确认,以避免形态模糊,这是孟加拉国首次报道的数据。利用属特异性通用引物扩增该COI基因的部分序列。成功测定了COI基因的目的核苷酸序列,长度为616 bp,鉴定该条带鱼为Eupleurogrammus sp.。在扩增区域内,GC和AT含量分别为45.5%和54.5%。与genbank数据库中eupleurogramus属的其他种相比,其种间多态性为16.88%。该序列将作为分子条形码,在属水平上对eupleurogramus sp.进行鉴定。中国生物医学工程学报,30 (2):331 - 338,2012
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Molecular Identification of Ribbon Fish (Eupleurogrammus Sp.) Using Partial Sequence of Mitochondrial COI Gene
Dry fish is considered as a delicacy in the menu of many people of Bangladesh. The most economically important marine and freshwater dried fishes are ribbon fish, bombay duck, olive barb, pomfret, shrimp, etc. In this study, fresh ribbon fish sample was collected from Cox's Bazar and morphologically identified as ribbon fish. The collected fish was confirmed through a molecular technique using mitochondrial COI gene (cytochrome c oxidase subunit I) to avoid morphological ambiguity, which is first reported data from Bangladesh. Partial sequence of this COI gene was amplified using a genus specific universal primer set. The target nucleotide sequence of COI gene was determined successfully with 616 bp length and the ribbon fish was identified as Eupleurogrammus sp. Within the amplified region GC and AT content were 45.5% and 54.5%, respectively. 16.88% interspecific polymorphism was observed when compared with other species under genus Eupleurogrammus collected from Gen Bank database. This sequence will be used as molecular bar code for authentic identification of Eupleurogrammus sp. at genus level. Bangladesh J. Zool. 50 (2): 231-238, 2022
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