{"title":"最小-最大峰度层均值:一种改进的K - means聚类初始化方法用于多维大数据上的微阵列基因聚类","authors":"K. Pandey, D. Shukla","doi":"10.1002/cpe.7185","DOIUrl":null,"url":null,"abstract":"Microarray gene clustering is a big data application that employs the K‐means (KM) clustering algorithm to identify hidden patterns, evolutionary relationships, unknown functions and gene trends for disease diagnosis, tissue detection and biological analysis. The selection of initial centroids is a major issue in the KM algorithm because it influences the effectiveness, efficiency and local optima of the cluster. The existing initial centroid initialization algorithm is computationally expensive and degrades cluster quality due to the large dimensionality and interconnectedness of microarray gene data. To deal with this issue, this study proposed the min‐max kurtosis stratum mean (MKSM) algorithm for big data clustering in a single machine environment. The MKSM algorithm uses kurtosis for dimension selection, mean distance for gene relationship identification, and stratification for heterogeneous centroid extraction. The results of the presented algorithm are compared to the state‐of‐the‐art initialization strategy on twelve microarray gene datasets utilizing internal, external and statistical assessment criteria. The experimental results demonstrate that the MKSMKM algorithm reduces iterations, distance computation, data comparison and local optima, and improves cluster performance, effectiveness and efficiency with stable convergence.","PeriodicalId":10584,"journal":{"name":"Concurrency and Computation: Practice and Experience","volume":"10 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2022-07-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":"{\"title\":\"Min‐max kurtosis stratum mean: An improved K‐means cluster initialization approach for microarray gene clustering on multidimensional big data\",\"authors\":\"K. Pandey, D. Shukla\",\"doi\":\"10.1002/cpe.7185\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Microarray gene clustering is a big data application that employs the K‐means (KM) clustering algorithm to identify hidden patterns, evolutionary relationships, unknown functions and gene trends for disease diagnosis, tissue detection and biological analysis. The selection of initial centroids is a major issue in the KM algorithm because it influences the effectiveness, efficiency and local optima of the cluster. The existing initial centroid initialization algorithm is computationally expensive and degrades cluster quality due to the large dimensionality and interconnectedness of microarray gene data. To deal with this issue, this study proposed the min‐max kurtosis stratum mean (MKSM) algorithm for big data clustering in a single machine environment. The MKSM algorithm uses kurtosis for dimension selection, mean distance for gene relationship identification, and stratification for heterogeneous centroid extraction. The results of the presented algorithm are compared to the state‐of‐the‐art initialization strategy on twelve microarray gene datasets utilizing internal, external and statistical assessment criteria. The experimental results demonstrate that the MKSMKM algorithm reduces iterations, distance computation, data comparison and local optima, and improves cluster performance, effectiveness and efficiency with stable convergence.\",\"PeriodicalId\":10584,\"journal\":{\"name\":\"Concurrency and Computation: Practice and Experience\",\"volume\":\"10 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2022-07-16\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Concurrency and Computation: Practice and Experience\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1002/cpe.7185\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Concurrency and Computation: Practice and Experience","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1002/cpe.7185","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 1
摘要
微阵列基因聚类是一种大数据应用,采用K - means (KM)聚类算法识别隐藏模式、进化关系、未知功能和基因趋势,用于疾病诊断、组织检测和生物学分析。初始质心的选择是KM算法中的一个重要问题,它影响聚类的有效性、效率和局部最优性。现有的初始质心初始化算法由于微阵列基因数据的大维度和互联性,计算成本高,并且降低了聚类质量。为了解决这一问题,本研究提出了单机环境下大数据聚类的最小-最大峰度地层均值(MKSM)算法。MKSM算法使用峰度进行维数选择,使用平均距离进行基因关系识别,使用分层进行异质质心提取。将所提出算法的结果与利用内部、外部和统计评估标准的12个微阵列基因数据集的最先进初始化策略进行比较。实验结果表明,MKSMKM算法减少了迭代、距离计算、数据比较和局部最优,提高了聚类性能、有效性和效率,收敛稳定。
Min‐max kurtosis stratum mean: An improved K‐means cluster initialization approach for microarray gene clustering on multidimensional big data
Microarray gene clustering is a big data application that employs the K‐means (KM) clustering algorithm to identify hidden patterns, evolutionary relationships, unknown functions and gene trends for disease diagnosis, tissue detection and biological analysis. The selection of initial centroids is a major issue in the KM algorithm because it influences the effectiveness, efficiency and local optima of the cluster. The existing initial centroid initialization algorithm is computationally expensive and degrades cluster quality due to the large dimensionality and interconnectedness of microarray gene data. To deal with this issue, this study proposed the min‐max kurtosis stratum mean (MKSM) algorithm for big data clustering in a single machine environment. The MKSM algorithm uses kurtosis for dimension selection, mean distance for gene relationship identification, and stratification for heterogeneous centroid extraction. The results of the presented algorithm are compared to the state‐of‐the‐art initialization strategy on twelve microarray gene datasets utilizing internal, external and statistical assessment criteria. The experimental results demonstrate that the MKSMKM algorithm reduces iterations, distance computation, data comparison and local optima, and improves cluster performance, effectiveness and efficiency with stable convergence.