利用ADMET分析、DFT计算和两种抗癌药物的分子对接进行计算分析

Q3 Biochemistry, Genetics and Molecular Biology Turkish Computational and Theoretical Chemistry Pub Date : 2023-01-15 DOI:10.33435/tcandtc.1102295
Anaridha S., Mohamed IMRAN P K, Khaja MOHİDEEN A, Salım MEERAN I, Shabeer T. K.
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引用次数: 0

摘要

计算研究选择美国FDA批准的分别用于治疗乳腺癌和滤泡性淋巴瘤的抗癌药物ribociclib和copanlisib。通过DFT和MP2量子化学计算对药物进行能量优化。比较了每个原子的DFT值和MP2值的化学描述符参数,并报道了最活泼和最稳定的原子。为了描述药物分子的反应性和稳定性,计算了福井函数。将药物与表皮生长因子受体(EGFR)和细胞凋亡抑制蛋白-1 (cIAP1)受体蛋白进行分子对接,研究药物-蛋白结合相互作用。优化前后的结合能分别为-11.21和-14.41 kcal.mol-1,而ribociclib的结合能分别为-13.58和-29.08 kcal。据报道,原子O27和O10是基于高柔软值的最活泼的原子。药物的吸收、分布、代谢、排泄和毒性(ADMET)特性采用开源的硅工具进行评估。药物分子的ADME谱显示其在胃肠道中的溶解度好至中等,吸收率低至高。两种抗癌药物的预测毒性均为5级。本研究关注的药物的结构和生物活性特性有助于评估更好的抗癌药物反应模式。
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Computational analysis using ADMET profiling, DFT calculations and molecular docking of two anti-cancer drugs
U.S. FDA approved anti-cancer drugs, namely ribociclib and copanlisib used for treating breast cancer and follicular lymphoma, respectively, were chosen for computational study. Quantum chemical calculations via DFT and MP2 were used for energy optimization of the drugs. Chemical descriptor parameters were compared between DFT and MP2 values for each atom, and the most reactive and stable atoms were reported. To describe the reactivity and stability of the drug molecules, Fukui functions were calculated. Molecular docking of the drugs was performed against epidermal growth factor receptor (EGFR) and cellular inhibitor of apoptosis protein-1 (cIAP1) receptor proteins to study the drug-protein binding interactions. The binding energy values before optimization and after optimization were found to be -11.21 and -14.41 kcal.mol-1 for copanlisib and -13.58 kcal and -29.08 kcal for ribociclib respectively. Atoms O27 and O10 are reported to be the most reactive atom based on high softness value. Absorption, distribution, metabolism, excretion, and toxicity (ADMET) properties of the drugs were evaluated using open-source in-silico tools. ADME profiling of drug molecules indicated good to moderate solubility and low to high absorption in the gastrointestinal tract. Predicted toxicity was class five for both anti-cancer drugs. The structural and bioactive properties of the drugs focused on in this study help evaluate the better reactivity patterns of anticancer medicines.
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来源期刊
Turkish Computational and Theoretical Chemistry
Turkish Computational and Theoretical Chemistry Biochemistry, Genetics and Molecular Biology-Biochemistry, Genetics and Molecular Biology (miscellaneous)
CiteScore
2.40
自引率
0.00%
发文量
4
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