TaqMan™探针法在生物样品上鉴定ambrosia甲虫Anisandrus dispar (Fabricius)(鞘翅目Curculionidae Scolytinae)

IF 1.5 4区 农林科学 Q2 FORESTRY Iforest - Biogeosciences and Forestry Pub Date : 2023-06-30 DOI:10.3832/ifor4287-016
D. Rizzo, Andrea d'Agostino, Igor Stabile, Chiara Ranaldi, Andrea Marrucci, C. Zubieta, D. Lio, L. Bartolini, F. Pennacchio, E. Rossi, A. Garonna, Matteo Marchioro
{"title":"TaqMan™探针法在生物样品上鉴定ambrosia甲虫Anisandrus dispar (Fabricius)(鞘翅目Curculionidae Scolytinae)","authors":"D. Rizzo, Andrea d'Agostino, Igor Stabile, Chiara Ranaldi, Andrea Marrucci, C. Zubieta, D. Lio, L. Bartolini, F. Pennacchio, E. Rossi, A. Garonna, Matteo Marchioro","doi":"10.3832/ifor4287-016","DOIUrl":null,"url":null,"abstract":"The European shot-hole borer Anisandrus dispar (Fabricius) (Coleoptera Cur-culionidae Scolytinae) is a well-known ambrosia beetle living on shrubs and several ornamental and fruiting trees where it can cause heavy damages. Like other harmful xyleborine species, A. dispar can represent a potential threat outside its native region. Molecular diagnostic tools can lead to accurate identification of xylophagous species hidden in wooden matrix in phytosanitary surveys at entry points. A molecular assay based on qPCR TaqMan™ Probes was developed for the identification of A. dispar from different matrices. To setup and perform the test, DNA extraction was carried out from adults, larvae, and artificial samples of wood chips from oak healthy plants whose lysates were contaminated with a known amount of DNA of A. dispar adults. The assay has proven inclusive for A. dispar, and exclusive towards the non-target organisms, showing 100% analytical specificity. The limit of detection was 0.32 pg µL -1 for the samples of insect adult DNA of A. dispar , and at 0.8 pg µL -1 for the samples containing lysates of Quercus spp. and 0.1 ng µL -1 of A. dispar adult DNA. Repeatability and reproducibility showed low values independently from the matrix used for DNA extraction, confirming the possible use in diagnostics of biological samples even if not directly related to the presence of A. dispar developmental stages. The presented approach may be adjusted and applied for phytosanitary purposes to other quarantine pests and rapidly detect possible infestations in vegetal matrices globally traded","PeriodicalId":13323,"journal":{"name":"Iforest - Biogeosciences and Forestry","volume":"34 1","pages":""},"PeriodicalIF":1.5000,"publicationDate":"2023-06-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Identification of the ambrosia beetle Anisandrus dispar (Fabricius) (Coleoptera Curculionidae Scolytinae) using TaqMan™ probe assay on biological samples\",\"authors\":\"D. Rizzo, Andrea d'Agostino, Igor Stabile, Chiara Ranaldi, Andrea Marrucci, C. Zubieta, D. Lio, L. Bartolini, F. Pennacchio, E. Rossi, A. Garonna, Matteo Marchioro\",\"doi\":\"10.3832/ifor4287-016\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"The European shot-hole borer Anisandrus dispar (Fabricius) (Coleoptera Cur-culionidae Scolytinae) is a well-known ambrosia beetle living on shrubs and several ornamental and fruiting trees where it can cause heavy damages. Like other harmful xyleborine species, A. dispar can represent a potential threat outside its native region. Molecular diagnostic tools can lead to accurate identification of xylophagous species hidden in wooden matrix in phytosanitary surveys at entry points. A molecular assay based on qPCR TaqMan™ Probes was developed for the identification of A. dispar from different matrices. To setup and perform the test, DNA extraction was carried out from adults, larvae, and artificial samples of wood chips from oak healthy plants whose lysates were contaminated with a known amount of DNA of A. dispar adults. The assay has proven inclusive for A. dispar, and exclusive towards the non-target organisms, showing 100% analytical specificity. The limit of detection was 0.32 pg µL -1 for the samples of insect adult DNA of A. dispar , and at 0.8 pg µL -1 for the samples containing lysates of Quercus spp. and 0.1 ng µL -1 of A. dispar adult DNA. Repeatability and reproducibility showed low values independently from the matrix used for DNA extraction, confirming the possible use in diagnostics of biological samples even if not directly related to the presence of A. dispar developmental stages. The presented approach may be adjusted and applied for phytosanitary purposes to other quarantine pests and rapidly detect possible infestations in vegetal matrices globally traded\",\"PeriodicalId\":13323,\"journal\":{\"name\":\"Iforest - Biogeosciences and Forestry\",\"volume\":\"34 1\",\"pages\":\"\"},\"PeriodicalIF\":1.5000,\"publicationDate\":\"2023-06-30\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Iforest - Biogeosciences and Forestry\",\"FirstCategoryId\":\"97\",\"ListUrlMain\":\"https://doi.org/10.3832/ifor4287-016\",\"RegionNum\":4,\"RegionCategory\":\"农林科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"FORESTRY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Iforest - Biogeosciences and Forestry","FirstCategoryId":"97","ListUrlMain":"https://doi.org/10.3832/ifor4287-016","RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"FORESTRY","Score":null,"Total":0}
引用次数: 0

摘要

欧洲针孔虫Anisandrus dispar (Fabricius)(鞘翅目curculionidae Scolytinae)是一种众所周知的生活在灌木和一些观赏和果树上的ambrosia甲虫,它可以在那里造成严重的破坏。像其他有害的木草碱物种一样,异叶假单胞虫可以在其原生区域之外代表潜在的威胁。在入境口岸植物检疫调查中,分子诊断工具可以准确识别隐藏在木质基质中的木食物种。建立了一种基于qPCR TaqMan™探针的分子检测方法,用于鉴定来自不同基质的A. dispar。为了建立和执行测试,从橡树健康植物的成虫、幼虫和木屑的人工样本中提取DNA,这些橡树健康植物的裂解物被已知数量的a . dispar成虫DNA污染。该分析已被证明对异芽孢杆菌具有包容性,对非目标生物具有排他性,显示出100%的分析特异性。昆虫成虫DNA样品的检出限为0.32 pgµL -1,含有栎类裂解物的样品的检出限为0.8 pgµL -1,含有白棘成虫DNA的检出限为0.1 ngµL -1。可重复性和再现性显示出较低的值,独立于用于DNA提取的基质,证实了在生物样品诊断中的可能使用,即使与A. dispar发育阶段的存在没有直接关系。所提出的方法可以调整并应用于植物检疫目的,以其他检疫性有害生物,并快速检测全球交易的植物基质中可能发生的侵染
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Identification of the ambrosia beetle Anisandrus dispar (Fabricius) (Coleoptera Curculionidae Scolytinae) using TaqMan™ probe assay on biological samples
The European shot-hole borer Anisandrus dispar (Fabricius) (Coleoptera Cur-culionidae Scolytinae) is a well-known ambrosia beetle living on shrubs and several ornamental and fruiting trees where it can cause heavy damages. Like other harmful xyleborine species, A. dispar can represent a potential threat outside its native region. Molecular diagnostic tools can lead to accurate identification of xylophagous species hidden in wooden matrix in phytosanitary surveys at entry points. A molecular assay based on qPCR TaqMan™ Probes was developed for the identification of A. dispar from different matrices. To setup and perform the test, DNA extraction was carried out from adults, larvae, and artificial samples of wood chips from oak healthy plants whose lysates were contaminated with a known amount of DNA of A. dispar adults. The assay has proven inclusive for A. dispar, and exclusive towards the non-target organisms, showing 100% analytical specificity. The limit of detection was 0.32 pg µL -1 for the samples of insect adult DNA of A. dispar , and at 0.8 pg µL -1 for the samples containing lysates of Quercus spp. and 0.1 ng µL -1 of A. dispar adult DNA. Repeatability and reproducibility showed low values independently from the matrix used for DNA extraction, confirming the possible use in diagnostics of biological samples even if not directly related to the presence of A. dispar developmental stages. The presented approach may be adjusted and applied for phytosanitary purposes to other quarantine pests and rapidly detect possible infestations in vegetal matrices globally traded
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
3.30
自引率
0.00%
发文量
54
审稿时长
6 months
期刊介绍: The journal encompasses a broad range of research aspects concerning forest science: forest ecology, biodiversity/genetics and ecophysiology, silviculture, forest inventory and planning, forest protection and monitoring, forest harvesting, landscape ecology, forest history, wood technology.
期刊最新文献
How biomass and other tree architectural characteristics relate to the structural complexity of a beech-pine forest Performance assessment of two plotless sampling methods for density estimation applied to some Alpine forests of northeastern Italy A WebGIS tool to support forest management at regional and local scale Variations in the performance of hybrid poplars subjected to the inoculation of a microbial consortium and water restriction Effects of silvicultural thinning on stand structure and coarse woody debris in the deciduous Arasbaran forest, Iran
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1