scIAMC:通过自适应矩阵补全的单细胞植入

IF 3.7 3区 计算机科学 Q2 COMPUTER SCIENCE, INFORMATION SYSTEMS Journal of Cloud Computing-Advances Systems and Applications Pub Date : 2023-07-01 DOI:10.1109/CSCloud-EdgeCom58631.2023.00059
Shuai Zhang, Xiang Chen, Li Peng
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引用次数: 0

摘要

单细胞测序技术经常受到技术噪声的影响,导致产生非常稀疏的表达矩阵。这种技术噪声被称为遗漏,是下游分析的主要挑战。在本研究中,我们引入scIAMC (single-cell imputation via adaptive parameter matrix补全),它基于矩阵补全理论来恢复表达矩阵中的缺失值。为了加快算法的运行速度,避免对数据进行任何参数调整,我们制定了一个优化问题。我们的方法增强了细胞群的识别和最小的错误,同时也恢复了被这些辍学破坏的生物景观。
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scIAMC:Single-Cell Imputation via adaptive matrix completion
Single-cell sequencing techniques are often impacted by technical noise, leading to the generation of very sparse expression matrices. This technical noise is referred to as dropouts and poses as a major challenge for downstream analysis. In this study, we introduce scIAMC (single-cell imputation via adaptive parameter matrix completion), which is based on matrix completion theory to recover missing values in expression matrices. To expedite the algorithm's running time and avoid any parameter tuning on data, we formulated an optimization problem. Our approach led to an enhanced cell population identification and minimal errors, while also restoring biological landscapes that were damaged by these dropouts.
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来源期刊
Journal of Cloud Computing-Advances Systems and Applications
Journal of Cloud Computing-Advances Systems and Applications Computer Science-Computer Networks and Communications
CiteScore
6.80
自引率
7.50%
发文量
76
审稿时长
75 days
期刊介绍: The Journal of Cloud Computing: Advances, Systems and Applications (JoCCASA) will publish research articles on all aspects of Cloud Computing. Principally, articles will address topics that are core to Cloud Computing, focusing on the Cloud applications, the Cloud systems, and the advances that will lead to the Clouds of the future. Comprehensive review and survey articles that offer up new insights, and lay the foundations for further exploratory and experimental work, are also relevant.
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