结合CNN-RNN架构和迁移学习的x射线COVID-19诊断

Md. Milon Islam , Md. Zabirul Islam , Amanullah Asraf , Mabrook S. Al-Rakhami , Weiping Ding , Ali Hassan Sodhro
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引用次数: 73

摘要

抗击COVID-19大流行已成为全球医疗保健领域最有希望的问题之一。需要准确和快速诊断COVID-19病例,以便采取正确的医疗措施来控制这场大流行。胸片成像技术在检测冠状病毒方面比逆转录聚合酶链反应(RT-PCR)方法更有效。由于医学图像的可用性有限,迁移学习更适合于医学图像中的模式分类。本文提出了一种卷积神经网络(CNN)和递归神经网络(RNN)的组合架构,用于从胸部x光片诊断COVID-19患者。本实验中使用的深度转移技术有VGG19、DenseNet121、inception - resnetv3和Inception-ResNetV2,其中使用CNN从样本中提取复杂特征,并使用RNN进行分类。在我们的实验中,VGG19-RNN架构在准确率方面优于所有其他网络。最后,利用梯度加权类激活映射(Grad-CAM)对图像的决策区域进行可视化。与其他现有系统相比,该系统取得了令人鼓舞的结果,并可能在未来更多样品可用时进行验证。该实验为医务人员提供了一种很好的替代诊断方法。研究过程中使用的所有数据都可以从Mendeley数据库中公开获取,网址为https://data.mendeley.com/datasets/mxc6vb7svm。为了进一步研究,我们在https://github.com/Asraf047/COVID19-CNN-RNN上公开了源代码。
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Diagnosis of COVID-19 from X-rays using combined CNN-RNN architecture with transfer learning

Combating the COVID-19 pandemic has emerged as one of the most promising issues in global healthcare. Accurate and fast diagnosis of COVID-19 cases is required for the right medical treatment to control this pandemic. Chest radiography imaging techniques are more effective than the reverse-transcription polymerase chain reaction (RT-PCR) method in detecting coronavirus. Due to the limited availability of medical images, transfer learning is better suited to classify patterns in medical images. This paper presents a combined architecture of convolutional neural network (CNN) and recurrent neural network (RNN) to diagnose COVID-19 patients from chest X-rays. The deep transfer techniques used in this experiment are VGG19, DenseNet121, InceptionV3, and Inception-ResNetV2, where CNN is used to extract complex features from samples and classify them using RNN. In our experiments, the VGG19-RNN architecture outperformed all other networks in terms of accuracy. Finally, decision-making regions of images were visualized using gradient-weighted class activation mapping (Grad-CAM). The system achieved promising results compared to other existing systems and might be validated in the future when more samples would be available. The experiment demonstrated a good alternative method to diagnose COVID-19 for medical staff.

All the data used during the study are openly available from the Mendeley data repository at https://data.mendeley.com/datasets/mxc6vb7svm. For further research, we have made the source code publicly available at https://github.com/Asraf047/COVID19-CNN-RNN.

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