基于序列和底物信息的植物UGT家族全基因组分析。

Y. Nishimura, T. Tokimatsu, Masaaki Kotera, S. Goto, M. Kanehisa
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引用次数: 3

摘要

UGTs (UDP糖基转移酶)是高等植物中最大的糖基转移酶基因家族,可调节次生代谢物、激素和外源物。该基因家族在植物次生代谢物的多样性中起着重要作用。植物ugt的生化活性和生理作用的实验数据越来越多,但大多数ugt仍未得到功能表征。为了从序列数据中了解它们的催化特异性和功能,系统发育分析主要是在拟南芥中实现的,但尚未应用大规模和全面的涵盖各种物种的方法。在这项研究中,我们收集了来自96种植物的733个UGT序列和252个底物特异性数据。我们构建了系统发育树,并将大部分基因划分为9个序列组,这些序列组具有生物化学特异性。此外,我们对7个植物物种的ugt进行了全基因组分析,并将它们定位到这些组中。我们认为这是从每个植物物种的基因组信息中了解其全糖基化次生代谢物的第一步。
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Genome-wide analysis of plant UGT family based on sequence and substrate information.
UGTs (UDP glycosyltransferase) are the largest glycosyltransferase gene family in higher plants, modifying secondary metabolites, hormones, and xenobiotics. This gene family plays an important role in the vast diversity of plant secondary metabolites specific to species. Experimental data of biochemical activities and physiological roles of plant UGTs are increasing but most UGTs are not still functionally characterized. To understand their catalytic specificity and function from sequence data, phylogenetic analyses have been achieved mainly in Arabidopsis, but massive and comprehensive approach covering various species has not been applied yet. In this study, we collected 733 UGT sequences derived from 96 plant species and 252 substrate specificity data. We constructed a phylogenetic tree and divided most part of these genes into nine sequence groups, which are characterized by biochemical specificity. Furthermore, we performed genome-wide analysis of seven plant species UGTs by mapping them into these groups. We propose this is the first step to understand whole glycosylated secondary metabolites of each plant species from its genome information.
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