酸橘汁腌鱼生鱼细菌多样性分析

M. Martinez, Guadalupe Concepción Rodríguez Castillejos, María Cristina Hernández Jiménez, Laura Yanneth Ramírez Quintanilla, Fernando Siller Lopez, Erika Acosta Cruz, H. M. Montoya
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引用次数: 0

摘要

酸橘汁腌鱼是一种传统的菜肴,由生鱼肉在酸橙汁中腌制而成,在整个制作过程中没有任何加热烹饪步骤。虽然有机酸作为抗菌剂的使用是众所周知的;最近的研究表明,酸橙汁实际上可以降低副溶血性弧菌感染的风险,但对其他潜在的病原体无效。尽管新鲜的鱼肉是安全的;暴露的器官包括皮肤、鳃和内脏是潜在的细菌污染来源。在墨西哥,腹泻病主要由受污染的食物引起;据估计,近67%的感染是由于细菌病原体的存在,主要是在冷冻和新鲜鱼类中。本研究的主要目的是利用宏基因组方法估计即食酸橘汁腌鱼中存在的微生物物种的分类多样性。对6份市售酸橘汁腌鱼样品进行了DNA高通量测序和生物信息学分析,每个样品鉴定出65,000至131,000个reads。通过样品鉴定的优势门是变形菌门、拟杆菌门和厚壁菌门。我们讨论了影响这类生食品微生物质量的因素,以及它们如何影响分析样品中的细菌多样性。
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ANALYSIS OF BACTERIAL DIVERSITY IN RAW FISH CEVICHE
Ceviche is a traditional dish made from raw fish meat marinated in lime juice without any heat cooking step throughout its preparation process. Although the use of organic acids as antibacterial agents is well known; recent research indicates that lime juice actually can reduce the risk of V. parahemolyticus infections but it is ineffective against other potential pathogens. Despite the fact that fresh fish meat is safe; exposed organs including skin, gills and guts represent a potential source of bacterial contamination. In Mexico, diarrheal diseases are caused mainly by contaminated food; it is estimated that almost 67% of infections are due the presence of bacterial agents mainly in frozen and fresh fish. The main objective of this study was to estimate the taxonomic diversity of microbial species present in ready-to-eat ceviche using a metagenomic approach. Six samples of commercially available ceviche were subjected to DNA high throughput sequencing and bioinformatics analyses, we identified between 65,000 and 131,000 reads per sample. The predominant phyla identified through the samples were Proteobacteria, Bacteroidetes and Firmicutes. We discuss the factors involved in the microbiological quality of this kind of raw foods and how they influence the bacterial diversity within the analyzed samples.
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