Structural basis for altered activity of M‐ and H‐isozyme forms of human lactate dehydrogenase

Lactate dehydrogenase (LDH) interconverts pyruvate and lactate with concomitant interconversion of NADH and NAD+. Although crystal structures of a variety of LDH have previously been described, a notable absence has been any of the three known human forms of this glycolytic enzyme. We have now determined the crystal structures of two isoforms of human LDH—the M form, predominantly found in muscle; and the H form, found mainly in cardiac muscle. Both structures have been crystallized as ternary complexes in the presence of the NADH cofactor and oxamate, a substrate‐like inhibitor. Although each of these isoforms has different kinetic properties, the domain structure, subunit association, and active‐site regions are indistinguishable between the two structures. The pKa that governs the KM for pyruvate for the two isozymes is found to differ by about 0.94 pH units, consistent with variation in pKa of the active‐site histidine. The close similarity of these crystal structures suggests the distinctive activity of these enzyme isoforms is likely to result directly from variation of charged surface residues peripheral to the active site, a hypothesis supported by electrostatic calculations based on each structure. Proteins 2001;43:175–185. © 2001 Wiley‐Liss, Inc.