Herlin S Hubu, Stenly Wullur, Veibe Warouw, Elvy Ginting, R. Bara, A. Wantasen
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引用次数: 0
摘要
本研究旨在鉴定并构建以加工渔业废饲料为营养来源的轮尾轮虫(Brachionus rotudiforis)培养基中分离细菌的分子系统发育。鱼渣饲料对轮虫的生长和养分含量有积极的影响。提取分离菌BRLI- 01的基因组DNA,利用引物(8F和1492F)扩增16S rRNA基因,采用Sanger测序技术进行测序。使用SeqScanner®和MEGA®对16S rRNA基因进行分析,然后在NCBI (National Centre for Biotechnology Information)使用BLAST (Basic Local Alignment Search Tool)分析。16S rRNA基因细菌NCBI位点扩增结果,为细菌种类鉴定和系统发育提供参考。BRLI-01在轮虫饲养培养基上成功培养。分离菌的16S rRNA基因扩增结果显示一条长度为1400 bp的DNA条带。NCBI的BLAST结果表明,分离菌BRLI-01与轮虫弧菌的系统进化分支位置相同,同源性为98.46%。关键词:轮虫,细菌,鱼粪,16S rRNA基因,系统进化鉴定
FILOGENI MOLEKULER BAKTERI DARI MEDIA PEMELIHARAAN ROTIFER YANG DIBERI OLAHAN LIMBAH IKAN SEBAGAI SUMBER NUTRISI
This study aims to identify and construct molecular phylogeny of an isolate bacteria from culture media of rotifer Brachionus rotudiforis supplied with processed fishery waste feed as nutritional source. The use of fish waste-based food for rotifer showed positive effects on growth and nutrient content of the rotifers. Genomic DNA of the isolate bacteria BRLI- 01 was extracted and the 16S rRNA gene was amplified using primers (8F and 1492F) and further sequenced using Sanger sequence technique. The 16S rRNA gene was analysed using SeqScanner® and MEGA® followed with BLAST (Basic Local Alignment Search Tool) analyses in the NCBI (National Centre for Biotechnology Information). Amplification result of 16S rRNA gene bacteria s NCBI site as a reference for identification and phylogeny of bacterial species. BRLI-01 was successfully cultured on rotifer rearing media. The results of the 16S rRNA gene amplification of the isolate bacteria showed a DNA band with a length of 1400 bp. The BLAST result on the NCBI showed that the isolate bacteria BRLI-01 had a percent identity (98.46%) and is in the same phylogony branching position with Vibrio rotiferianus Keywords: Rotifers, Bacteria, Fish waste, 16S rRNA Genes, Phylogeny identification