蛋白质组学时代的毒理学:蛛形纲毒物蛋白质组学综述。

IF 1.8 3区 医学 Q4 TOXICOLOGY Journal of Venomous Animals and Toxins Including Tropical Diseases Pub Date : 2022-02-28 eCollection Date: 2022-01-01 DOI:10.1590/1678-9199-JVATITD-2021-0034
Filipi Calbaizer Marchi, Edneia Mendes-Silva, Lucas Rodrigues-Ribeiro, Lucas Gabriel Bolais-Ramos, Thiago Verano-Braga
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引用次数: 0

摘要

毒液组学(venomics)一词是为了表彰使用全息技术研究毒液蛋白质和肽的研究而创造的。毒液组学在过去 20 年中有了长足的发展。最早的蝎子或蜘蛛毒液学研究发表于 2000 年代初。这些研究依靠肽质量指纹图谱(PMF)来描述毒液的复杂性。随着分辨率、灵敏度和质量精确度更高的新型质谱仪以及新一代核苷酸测序技术的引入,蝎子和蜘蛛毒液组学研究中报告的数据复杂性成倍增加,从而使研究更加全面。在本综述文章中,我们介绍了有关蝎子毒液组学和蜘蛛毒液组学的主要出版物,介绍了过去几年中的历史依据和所采用的技术。本综述中介绍的文献是在PubMed数据库中以"(蝎毒液)和(蛋白质组)"为关键词搜索蝎毒液组学,以"(蜘蛛毒液)和(蛋白质组)"为关键词搜索蜘蛛毒液组学后筛选出来的。我们介绍了所涉及论文中与蛋白质组学有关的关键方面,包括但不限于所采用的蛋白质组学策略(即 PMF、二维凝胶电泳、霰弹枪/自下而上和/或自上而下/肽组)以及所使用的质谱仪类型。本研究可以得出一些结论。例如,对蝎属 Tityus 的毒液组学研究最多,其次是 Centruroides;而对蜘蛛属的研究则发现其分布较为平均。另一个有趣的结论是缺乏对蝎子和蜘蛛蛋白质翻译后修饰(PTMs)的高通量研究。我们认为,PTMs 可以调节蝎子和蜘蛛毒素的活性,因此应该对其进行更多的研究。
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Toxinology in the proteomics era: a review on arachnid venom proteomics.

The word venomics was coined to acknowledge the studies that use omics to investigate venom proteins and peptides. Venomics has evolved considerably over the last 20 years. The first works on scorpion or spider venomics were published in the early 2000's. Such studies relied on peptide mass fingerprinting (PMF) to characterize venom complexity. After the introduction of new mass spectrometers with higher resolution, sensitivity and mass accuracy, and the next-generation nucleotide sequencing, the complexity of data reported in research on scorpion and spider venomics increased exponentially, which allowed more comprehensive studies. In the present review article, we covered key publications on scorpion venomics and spider venomics, presenting historical grounds and implemented technologies over the last years. The literature presented in this review was selected after searching the PubMed database using the terms "(scorpion venom) AND (proteome)" for scorpion venomics, and "(spider venom) AND (proteome)" for publications on spider venomics. We presented the key aspects related to proteomics in the covered papers including, but not restricted to, the employed proteomic strategy (i.e., PMF, two-dimensional gel electrophoresis, shotgun/bottom-up and/or top-down/peptidome), and the type of mass spectrometer used. Some conclusions can be drawn from the present study. For example, the scorpion genus Tityus is the most studied concerning venomics, followed by Centruroides; whereas for spiders the studied genera were found more equally distributed. Another interesting conclusion is the lack of high throughput studies on post-translational modifications (PTMs) of scorpion and spider proteins. In our opinion, PTMs should be more studied as they can modulate the activity of scorpion and spider toxins.

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来源期刊
CiteScore
4.80
自引率
8.30%
发文量
39
审稿时长
6-12 weeks
期刊介绍: Journal of Venomous Animals and Toxins including Tropical Diseases (JVATiTD) is a non-commercial academic open access publication dedicated to research on all aspects of toxinology, venomous animals and tropical diseases. Its interdisciplinary content includes original scientific articles covering research on toxins derived from animals, plants and microorganisms. Topics of interest include, but are not limited to:systematics and morphology of venomous animals;physiology, biochemistry, pharmacology and immunology of toxins;epidemiology, clinical aspects and treatment of envenoming by different animals, plants and microorganisms;development and evaluation of antivenoms and toxin-derivative products;epidemiology, clinical aspects and treatment of tropical diseases (caused by virus, bacteria, algae, fungi and parasites) including the neglected tropical diseases (NTDs) defined by the World Health Organization.
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