利用皮秒时间分辨红外光谱和MD模拟互补揭示单分子溶剂重定向动力学

M. Miyazaki
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摘要

溶质分子周围溶剂分子的动力学在化学和生物过程中起着至关重要的作用,如化学反应性、生物识别和疏水相互作用。尽管对溶剂化动力学进行了广泛的研究,但由于各种环境下溶剂分子的平均效应,在缩合相中很难获得单分子水平的动力学信息。在本研究中,可以明确定义水化大小和取向的气相水化团簇被用作模型系统,通过皮秒时间分辨红外光谱和动态DFT MD模拟的互补,以分子特定的方式阐明溶剂化动力学。作为溶剂重定向的第一个例子,研究了CO结合的乙酰苯胺-水团簇中电离诱导的CO→NH水重定向。时间分辨红外光谱显示,该反应有中间产物,大约需要6ps才能完成重定向。MD模拟表明,该反应由两个不同的通道组成;一个是快速通道,水分子绕着ch3基团运动,另一个是慢通道,水分子一度停留在分子平面之上。通过在确定静态团簇结构的既定方法中引入一个新的维度,即时间,即红外光谱+量子化学计算,首次获得了关于水重定向动力学的详细信息。这一概念将为利用气相溶剂化团簇在分子水平上研究动态过程开辟一个新的阶段。
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Revealing Single Molecular Solvent Reorientation Dynamics by Complementary Use of Picosecond Time Resolved IR Spectroscopy and MD Simulation
Dynamics of solvent molecules around a solute molecule plays a crucial role in chemical and biological processes, such as chemical reactivity, biological recognition, and hydrophobic interaction. Though extensive studies on the solvation dynamics have been carried out, the single molecular level information about the dynamics is hard to obtain in the condensed phase suffered by averaging effects over solvent molecules in various environments. In this study, gas phase hydrated clusters, for which size and orientation of hydration can be specifically defined, are utilized as a model system to elucidate the solvation dynamics in a molecular specific fashion by complementary use of picosecond time resolved IR spectroscopy and on-the-fly DFT MD simulation. An ionization induced CO → NH water reorientation in the CO bound acetanilide–water cluster was investigated as the first example of solvent reorientation. The time resolved IR spectra revealed that the reaction has an intermediate and takes ca. 6 ps to finish the reorientation. The MD simulation showed that the reaction is composed of two different channels; one is a fast channel in which the water molecule travels around the CH 3 group and the other is a slow channel in which water molecule once stays above the molecular plane. This detailed information about the water reorientation dynamics is first obtained by introducing a new dimen-sion, i.e. time, into the established method of determining static cluster structures, IR spectroscopy + quantum chemical calculations. This concept would open a new stage to study dynamic processes in the molecular level using gas phase solvated clusters.
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