泛癌症转录组分析确定了六类免疫衰老基因,揭示了衰老、免疫系统和癌症之间的分子联系

IF 5 3区 医学 Q1 GENETICS & HEREDITY Genes and immunity Pub Date : 2023-02-17 DOI:10.1038/s41435-023-00197-9
Xinyue Wang, Shuang Guo, Hanxiao Zhou, Yue Sun, Jing Gan, Yakun Zhang, Wen Zheng, Caiyu Zhang, Peng Wang, Hui Zhi, Yue Gao, Xiaofeng Chen, Shangwei Ning
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摘要

衰老是一个复杂的过程,会对免疫系统产生重大影响。与衰老相关的免疫系统衰退(称为免疫衰老)可导致疾病的发生,包括癌症。免疫衰老基因的扰动可能是癌症与衰老之间关联的特征。然而,对泛癌症中免疫衰老基因的系统表征在很大程度上仍有待探索。在这项研究中,我们全面研究了免疫衰老基因的表达及其在 26 种癌症中的作用。我们根据免疫基因的表达谱和患者的临床信息,开发了一个综合计算管道来识别和表征癌症中的免疫衰老基因。我们发现了 2218 个在多种癌症中明显失调的免疫衰老基因。这些免疫衰老基因根据其与衰老的关系被分为六类。此外,我们还评估了免疫衰老基因在临床预后中的重要性,发现了 1327 个可作为癌症预后标志物的基因。BTN3A1、BTN3A2、CTSD、CYTIP、HIF1AN和RASGRP1与ICB免疫治疗反应相关,是黑色素瘤ICB免疫治疗后的预后因素。总之,我们的研究结果进一步加深了人们对免疫衰老与癌症之间关系的理解,并为患者的免疫疗法提供了启示。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Pan-cancer transcriptomic analysis identified six classes of immunosenescence genes revealed molecular links between aging, immune system and cancer
Aging is a complex process that significantly impacts the immune system. The aging-related decline of the immune system, termed immunosenescence, can lead to disease development, including cancer. The perturbation of immunosenescence genes may characterize the associations between cancer and aging. However, the systematical characterization of immunosenescence genes in pan-cancer remains largely unexplored. In this study, we comprehensively investigated the expression of immunosenescence genes and their roles in 26 types of cancer. We developed an integrated computational pipeline to identify and characterize immunosenescence genes in cancer based on the expression profiles of immune genes and clinical information of patients. We identified 2218 immunosenescence genes that were significantly dysregulated in a wide variety of cancers. These immunosenescence genes were divided into six categories based on their relationships with aging. Besides, we assessed the importance of immunosenescence genes in clinical prognosis and identified 1327 genes serving as prognostic markers in cancers. BTN3A1, BTN3A2, CTSD, CYTIP, HIF1AN, and RASGRP1 were associated with ICB immunotherapy response and served as prognostic factors after ICB immunotherapy in melanoma. Collectively, our results furthered the understanding of the relationship between immunosenescence and cancer and provided insights into immunotherapy for patients.
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来源期刊
Genes and immunity
Genes and immunity 医学-免疫学
CiteScore
8.90
自引率
4.00%
发文量
28
审稿时长
6-12 weeks
期刊介绍: Genes & Immunity emphasizes studies investigating how genetic, genomic and functional variations affect immune cells and the immune system, and associated processes in the regulation of health and disease. It further highlights articles on the transcriptional and posttranslational control of gene products involved in signaling pathways regulating immune cells, and protective and destructive immune responses.
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