硫氧化磁螺旋藻(Magnetospirillum sulfurrooxidans sp. nov.):具有硫依赖的岩石自养能力及红螺旋藻目的分类重新评价

IF 3.3 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Systematic and applied microbiology Pub Date : 2023-05-01 DOI:10.1016/j.syapm.2023.126406
Veronika V. Koziaeva , Dimitry Y. Sorokin , Tatiana V. Kolganova , Denis S. Grouzdev
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引用次数: 3

摘要

从淡水硫化物沉积物中分离出一种螺旋形的高运动细菌。菌株J10T是一种在微氧条件下利用硫化物、硫代硫酸盐和硫作为电子供体的兼性自养菌。尽管16S rRNA基因序列序列与gryphiswaldense Magnetospirillum MSR-1 T具有较高的同源性(99.6%),但两菌株之间的数字DNA-DNA杂交同源性和平均核苷酸同源性不同(分别为25%和83%)。应变J10T不是趋磁的。菌株J10T的DNA G + C含量为61.9%。主要的磷脂酯链脂肪酸是C18:1ω7、C16:1ω7和C16:0。应变J10T (= DSM 23205 T = VKM b - 3486 T)是第一个属的菌株Magnetospirillum显示lithoautotrophic增长和提出了小说作为一个物种,Magnetospirillum sulfuroxidans sp. 11月此外,我们建议建立一个框架,用于区分属内和家庭秩序红螺菌目基于phylogenomic分析使用的阈值平均氨基酸身份̴属和̴60%的家庭为72%。据此,我们建议将现有的Magnetospirillum属划分为Magnetospirillum、Paramagnetospirillum和Phaeospirillum三个属,构成一个独立的Magnetospirillum科。11 .红螺旋目。此外,系统基因组学数据表明,该目还包含6个新的科级类群,包括磁螺科。11月,磁弧菌科;11月,冬菇科。11月,龙葵科;11月,Fodinicurvataceae;11月,和海洋杆菌科fam。11月。
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Magnetospirillum sulfuroxidans sp. nov., capable of sulfur-dependent lithoautotrophy and a taxonomic reevaluation of the order Rhodospirillales

A spiral-shaped, highly motile bacterium was isolated from freshwater sulfidic sediment. Strain J10T is a facultative autotroph utilizing sulfide, thiosulfate, and sulfur as the electron donors in microoxic conditions. Despite high 16S rRNA gene sequence sequence identity to Magnetospirillum gryphiswaldense MSR-1 T (99.6 %), digital DNA-DNA hybridisation homology and average nucleotide identity between the two strains was of the different species level (25 % and 83 %, respectively). Strain J10T is not magnetotactic. The DNA G + C content of strain J10T is 61.9 %. The predominant phospholipid ester-linked fatty acids are C18:1ω7, C16:1ω7, and C16:0. Strain J10T (=DSM 23205 T = VKM B-3486 T) is the first strain of the genus Magnetospirillum showing lithoautotrophic growth and is proposed here as a novel species, Magnetospirillum sulfuroxidans sp. nov. In addition, we propose to establish a framework for distinguishing genera and families within the order Rhodospirillales based on phylogenomic analysis using the threshold values for average amino acid identity at ̴ 72 % for genera and ̴ 60 % for families. According to this, we propose to divide the existing genus Magnetospirillum into three genera: Magnetospirillum, Paramagnetospirillum, and Phaeospirillum, constituting a separate family Magnetospirillaceae fam. nov. in the order Rhodospirillales. Furthermore, phylogenomic data suggest that this order should accomodate six more new family level groups including Magnetospiraceae fam. nov., Magnetovibrionaceae fam. nov., Dongiaceae fam. nov., Niveispirillaceae fam. nov., Fodinicurvataceae fam. nov., and Oceanibaculaceae fam. nov.

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来源期刊
Systematic and applied microbiology
Systematic and applied microbiology 生物-生物工程与应用微生物
CiteScore
7.50
自引率
5.90%
发文量
57
审稿时长
22 days
期刊介绍: Systematic and Applied Microbiology deals with various aspects of microbial diversity and systematics of prokaryotes. It focuses on Bacteria and Archaea; eukaryotic microorganisms will only be considered in rare cases. The journal perceives a broad understanding of microbial diversity and encourages the submission of manuscripts from the following branches of microbiology:
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