基于胃癌患者癌症免疫疗法和免疫激活的综合分析。

IF 1.4 4区 生物学 Q4 GENETICS & HEREDITY Genetics research Pub Date : 2023-03-06 eCollection Date: 2023-01-01 DOI:10.1155/2023/4674536
Feng Jiang, Qilong Ma
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引用次数: 0

摘要

就侵袭性和预后而言,免疫细胞在胃癌(GC)的微环境中扮演着重要角色。目前,还没有确凿证据表明免疫状态分型是一种可靠的胃癌预后工具。本研究旨在开发一种基于免疫状态分型的基因特征,用于胃癌风险分层。TCGA数据用于基因表达和临床特征分析。应用ssGSEA算法对胃癌队列进行分型。我们进行了多变量和单变量 Cox 回归以及 lasso 回归,以确定哪些基因与胃癌预后相关。最后,我们利用免疫相关基因建立了一个 6 基因预后预测模型。进一步分析表明,该预后预测模型与胃癌患者的预后密切相关。包含基因特征和风险因素的提名图产生了更好的校准结果。风险评分与胃癌 T 分期之间的关系还与与特定免疫细胞亚群有关的多种免疫标记物显著相关。根据这些结果,患者的预后和肿瘤免疫细胞浸润与风险评分相关。此外,基于免疫细胞的遗传特征有助于改善胃癌的风险分层。有关免疫疗法和随访的临床决策可根据这些特征进行指导。
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Comprehensive Analysis Based on the Cancer Immunotherapy and Immune Activation of Gastric Cancer Patients.

When it comes to aggressiveness and prognosis, immune cells play an important role in the microenvironment of gastric cancer (GC). Currently, there is no well-established evidence that immune status typing is reliable as a prognostic tool for gastric cancer. This study aimed to develop a genetic signature based on immune status typing for the stratification of gastric cancer risk. TCGA data were used for gene expression and clinical characteristics analysis. A ssGSEA algorithm was applied to type the gastric cancer cohorts. A multivariate and univariate Cox regression and a lasso regression were conducted to determine which genes are associated with gastric cancer prognosis. Finally, we were able to produce a 6-gene prognostic prediction model using immune-related genes. Further analysis revealed that the prognostic prediction model is closely related to the prognosis of patients with GC. Nomograms incorporating genetic signatures and risk factors produced better calibration results. The relationship between the risk score and gastric cancer T stage was also significantly correlated with multiple immune markers related to specific immune cell subsets. According to these results, patients' outcomes and tumor immune cell infiltration correlate with risk scores. In addition, immune cellular-based genetic signatures can contribute to improved risk stratification for gastric cancer. Clinical decisions regarding immunotherapy and followup can be guided by these features.

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来源期刊
Genetics research
Genetics research 生物-遗传学
自引率
6.70%
发文量
74
审稿时长
>12 weeks
期刊介绍: Genetics Research is a key forum for original research on all aspects of human and animal genetics, reporting key findings on genomes, genes, mutations and molecular interactions, extending out to developmental, evolutionary, and population genetics as well as ethical, legal and social aspects. Our aim is to lead to a better understanding of genetic processes in health and disease. The journal focuses on the use of new technologies, such as next generation sequencing together with bioinformatics analysis, to produce increasingly detailed views of how genes function in tissues and how these genes perform, individually or collectively, in normal development and disease aetiology. The journal publishes original work, review articles, short papers, computational studies, and novel methods and techniques in research covering humans and well-established genetic organisms. Key subject areas include medical genetics, genomics, human evolutionary and population genetics, bioinformatics, genetics of complex traits, molecular and developmental genetics, Evo-Devo, quantitative and statistical genetics, behavioural genetics and environmental genetics. The breadth and quality of research make the journal an invaluable resource for medical geneticists, molecular biologists, bioinformaticians and researchers involved in genetic basis of diseases, evolutionary and developmental studies.
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