非靶向多模态LC-HRMS与lcms - tof离子迁移率注释的探索性数据融合:以白葡萄酒为例

IF 1.1 4区 化学 Q4 PHYSICS, ATOMIC, MOLECULAR & CHEMICAL European Journal of Mass Spectrometry Pub Date : 2023-04-01 DOI:10.1177/14690667231164096
Mpho Mafata, Maria Stander, Keabetswe Masike, Astrid Buica
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引用次数: 0

摘要

应用科学越来越关注将数据科学与分析工具相结合的组学研究。这些研究通常产生大量数据,目的是从中产生有意义的解释。这有时意味着通过数据融合技术组合和集成不同的数据集。在处理未知产品时,最具战略性的行动方针是使用探索性方法。对于组学,这意味着使用非目标分析方法和探索性数据分析技术。本研究旨在利用多因素分析对非靶向多模态(负模和正模)液相色谱-高分辨率质谱数据进行数据融合。数据融合结果使用双图投影上的聚类分层聚类进行解释。该研究将处理的数千个光谱信号减少到不到100个特征(保留时间和质量电荷比RT_m/z的主要参数组合)。计算集群成员(来自的样本和特征)之间的相关性,并为每个集群识别出前10%的高度相关特征。然后利用离子迁移谱中的次要参数(漂移时间、离子迁移常数和碰撞截面值)初步确定了这些特征。这些离子迁移率(二级)参数可用于未来的葡萄酒化学分析研究,并添加到应用科学中不断增长的注释化学信号列表中。
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Exploratory data fusion of untargeted multimodal LC-HRMS with annotation by LCMS-TOF-ion mobility: White wine case study.

Applied sciences have increased focus on omics studies which merge data science with analytical tools. These studies often result in large amounts of data produced and the objective is to generate meaningful interpretations from them. This can sometimes mean combining and integrating different datasets through data fusion techniques. The most strategic course of action when dealing with products of unknown profile is to use exploratory approaches. For omics, this means using untargeted analytical methods and exploratory data analysis techniques. The current study aimed to perform data fusion on untargeted multimodal (negative and positive mode) liquid chromatography-high-resolution mass spectrometry data using multiple factor analysis. The data fusion results were interpreted using agglomerative hierarchical clustering on biplot projections. The study reduced the thousands of spectral signals processed to less than a hundred features (a primary parameter combination of retention time and mass-to-charge ratios, RT_m/z). The correlations between cluster members (samples and features from) were calculated and the top 10% highly correlated features were identified for each cluster. These features were then tentatively identified using secondary parameters (drift time, ion mobility constant and collision cross-section values) from the ion mobility spectra. These ion mobility (secondary) parameters can be used for future studies in wine chemical analysis and added to the growing list of annotated chemical signals in applied sciences.

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来源期刊
CiteScore
2.40
自引率
7.70%
发文量
16
审稿时长
>12 weeks
期刊介绍: JMS - European Journal of Mass Spectrometry, is a peer-reviewed journal, devoted to the publication of innovative research in mass spectrometry. Articles in the journal come from proteomics, metabolomics, petroleomics and other areas developing under the umbrella of the “omic revolution”.
期刊最新文献
Exploring the versatility of mass spectrometry: Applications across diverse scientific disciplines. Analysis of dimer and trimer complexes of the non-amyloidogenic rat islet amyloid polypeptide 21-37 by electrospray ionization-tandem mass spectrometry. Clustering of biphenyl oxamide ions by chiral recognition. Concept and simulation of a novel dual-layer linear ion trap mass analyzer for micro-electromechanical systems mass spectrometry. Stereoscopic imaging of volatile organic compounds distribution in the region and tracing emission sources of volatile organic compounds using a novel movable single-photon ionization time-of-flight mass spectrometer.
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