FAIR词汇的特征。

IF 1.6 3区 工程技术 Q3 MATHEMATICAL & COMPUTATIONAL BIOLOGY Journal of Biomedical Semantics Pub Date : 2023-06-01 DOI:10.1186/s13326-023-00286-8
Fuqi Xu, Nick Juty, Carole Goble, Simon Jupp, Helen Parkinson, Mélanie Courtot
{"title":"FAIR词汇的特征。","authors":"Fuqi Xu,&nbsp;Nick Juty,&nbsp;Carole Goble,&nbsp;Simon Jupp,&nbsp;Helen Parkinson,&nbsp;Mélanie Courtot","doi":"10.1186/s13326-023-00286-8","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>The Findable, Accessible, Interoperable and Reusable(FAIR) Principles explicitly require the use of FAIR vocabularies, but what precisely constitutes a FAIR vocabulary remains unclear. Being able to define FAIR vocabularies, identify features of FAIR vocabularies, and provide assessment approaches against the features can guide the development of vocabularies.</p><p><strong>Results: </strong>We differentiate data, data resources and vocabularies used for FAIR, examine the application of the FAIR Principles to vocabularies, align their requirements with the Open Biomedical Ontologies principles, and propose FAIR Vocabulary Features. We also design assessment approaches for FAIR vocabularies by mapping the FVFs with existing FAIR assessment indicators. Finally, we demonstrate how they can be used for evaluating and improving vocabularies using exemplary biomedical vocabularies.</p><p><strong>Conclusions: </strong>Our work proposes features of FAIR vocabularies and corresponding indicators for assessing the FAIR levels of different types of vocabularies, identifies use cases for vocabulary engineers, and guides the evolution of vocabularies.</p>","PeriodicalId":15055,"journal":{"name":"Journal of Biomedical Semantics","volume":"14 1","pages":"6"},"PeriodicalIF":1.6000,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10236849/pdf/","citationCount":"2","resultStr":"{\"title\":\"Features of a FAIR vocabulary.\",\"authors\":\"Fuqi Xu,&nbsp;Nick Juty,&nbsp;Carole Goble,&nbsp;Simon Jupp,&nbsp;Helen Parkinson,&nbsp;Mélanie Courtot\",\"doi\":\"10.1186/s13326-023-00286-8\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background: </strong>The Findable, Accessible, Interoperable and Reusable(FAIR) Principles explicitly require the use of FAIR vocabularies, but what precisely constitutes a FAIR vocabulary remains unclear. Being able to define FAIR vocabularies, identify features of FAIR vocabularies, and provide assessment approaches against the features can guide the development of vocabularies.</p><p><strong>Results: </strong>We differentiate data, data resources and vocabularies used for FAIR, examine the application of the FAIR Principles to vocabularies, align their requirements with the Open Biomedical Ontologies principles, and propose FAIR Vocabulary Features. We also design assessment approaches for FAIR vocabularies by mapping the FVFs with existing FAIR assessment indicators. Finally, we demonstrate how they can be used for evaluating and improving vocabularies using exemplary biomedical vocabularies.</p><p><strong>Conclusions: </strong>Our work proposes features of FAIR vocabularies and corresponding indicators for assessing the FAIR levels of different types of vocabularies, identifies use cases for vocabulary engineers, and guides the evolution of vocabularies.</p>\",\"PeriodicalId\":15055,\"journal\":{\"name\":\"Journal of Biomedical Semantics\",\"volume\":\"14 1\",\"pages\":\"6\"},\"PeriodicalIF\":1.6000,\"publicationDate\":\"2023-06-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10236849/pdf/\",\"citationCount\":\"2\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Biomedical Semantics\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://doi.org/10.1186/s13326-023-00286-8\",\"RegionNum\":3,\"RegionCategory\":\"工程技术\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"MATHEMATICAL & COMPUTATIONAL BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Biomedical Semantics","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.1186/s13326-023-00286-8","RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"MATHEMATICAL & COMPUTATIONAL BIOLOGY","Score":null,"Total":0}
引用次数: 2

摘要

背景:可查找、可访问、可互操作和可重用(FAIR)原则明确要求使用FAIR词汇表,但具体是什么构成FAIR词汇表尚不清楚。能够定义FAIR词汇表,识别FAIR词汇表的特征,并提供针对这些特征的评估方法,可以指导词汇表的开发。结果:我们区分了FAIR使用的数据、数据资源和词汇表,考察了FAIR原则在词汇表中的应用,并将其要求与开放生物医学本体原则相结合,提出了FAIR词汇表特征。我们还通过将FVFs与现有的FAIR评估指标进行映射,设计了FAIR词汇表的评估方法。最后,我们将通过示例性生物医学词汇来演示如何使用它们来评估和改进词汇。结论:我们的工作提出了公平词汇的特征和相应的指标来评估不同类型词汇的公平水平,为词汇工程师确定了用例,并指导了词汇的演变。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Features of a FAIR vocabulary.

Background: The Findable, Accessible, Interoperable and Reusable(FAIR) Principles explicitly require the use of FAIR vocabularies, but what precisely constitutes a FAIR vocabulary remains unclear. Being able to define FAIR vocabularies, identify features of FAIR vocabularies, and provide assessment approaches against the features can guide the development of vocabularies.

Results: We differentiate data, data resources and vocabularies used for FAIR, examine the application of the FAIR Principles to vocabularies, align their requirements with the Open Biomedical Ontologies principles, and propose FAIR Vocabulary Features. We also design assessment approaches for FAIR vocabularies by mapping the FVFs with existing FAIR assessment indicators. Finally, we demonstrate how they can be used for evaluating and improving vocabularies using exemplary biomedical vocabularies.

Conclusions: Our work proposes features of FAIR vocabularies and corresponding indicators for assessing the FAIR levels of different types of vocabularies, identifies use cases for vocabulary engineers, and guides the evolution of vocabularies.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Journal of Biomedical Semantics
Journal of Biomedical Semantics MATHEMATICAL & COMPUTATIONAL BIOLOGY-
CiteScore
4.20
自引率
5.30%
发文量
28
审稿时长
30 weeks
期刊介绍: Journal of Biomedical Semantics addresses issues of semantic enrichment and semantic processing in the biomedical domain. The scope of the journal covers two main areas: Infrastructure for biomedical semantics: focusing on semantic resources and repositories, meta-data management and resource description, knowledge representation and semantic frameworks, the Biomedical Semantic Web, and semantic interoperability. Semantic mining, annotation, and analysis: focusing on approaches and applications of semantic resources; and tools for investigation, reasoning, prediction, and discoveries in biomedicine.
期刊最新文献
Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI). MeSH2Matrix: combining MeSH keywords and machine learning for biomedical relation classification based on PubMed. Annotation of epilepsy clinic letters for natural language processing An extensible and unifying approach to retrospective clinical data modeling: the BrainTeaser Ontology. Concretizing plan specifications as realizables within the OBO foundry.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1