从高氧修饰气氛包装肉类中分离的一种新种——肉糜Dellaglioa carnosa sp. nov.

IF 3.3 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Systematic and applied microbiology Pub Date : 2023-07-01 DOI:10.1016/j.syapm.2023.126423
Victoria Werum, Matthias Ehrmann
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引用次数: 2

摘要

该研究提供了从德国高氧修饰气氛包装牛肉中分离的三株细菌的分类特征。该新种菌株的16S rRNA基因序列与近缘海藻藻型菌株相同。然而,计算机DNA-DNA杂交(DDH)值表明它们属于不同的基因组物种。TMW 2.2523T与褐藻型菌株DSM 15638T之间的计算机DDH估计值仅为63.2%。TMW 2.2523T与近缘型菌株之间的全基因组平均核苷酸鉴定blast (ANIb)值为95.1%,在95 - 96%的推荐阈值范围内。此外,基于多位点序列比对(MLSA)的系统发育分析表明,菌株TMW 2.2523T与附加菌株TMW 2.2444和TMW 2.2533组成了一个与藻芽胞杆菌菌株分离的单系群。此外,酪氨酸脱羧酶活性可能归因于新提出的物种菌株。这种多相方法的结果支持这些菌株属于Dellaglioa属中的一个新种,我们建议将其命名为Dellaglioa carnosa sp. 11 .指定的各自类型菌株为TMW 2.2523T (DSM 114968T = LMG 32819T)。
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Description of Dellaglioa carnosa sp. nov., a novel species isolated from high-oxygen modified-atmosphere packaged meat

The study provides a taxonomic characterization of three bacterial strains isolated from high-oxygen modified-atmosphere packaged beef from Germany. The strains of the novel species shared identical 16S rRNA gene sequence to the closely related type strain of Dellaglioa algida. However, the in-silico DNA-DNA hybridization (DDH) values indicate that they belong to a different genomic species. The in silico DDH estimate value between TMW 2.2523T and the type strain of Dellaglioa algida DSM 15638T was only 63.2 %. The whole genome average nucleotide identity blast (ANIb) value of 95.1 % between TMW 2.2523T and the closely related type strain of D. algida was within the recommended threshold value of 95–96 % for bacterial species delineation. Additionally, the phylogenomic analyses based on multi locus sequence alignment (MLSA) showed that strain TMW 2.2523T and additional strains TMW 2.2444 and TMW 2.2533 formed a monophyletic group separate from D. algida strains. Furthermore, tyrosine decarboxylase activity could be attributed to strains of the new proposed species. The results of this polyphasic approach support the affiliation of these strains to a novel species within the genus Dellaglioa for which we propose the name Dellaglioa carnosa sp. nov. The designated respective type strain is TMW 2.2523T (DSM 114968T = LMG 32819T).

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来源期刊
Systematic and applied microbiology
Systematic and applied microbiology 生物-生物工程与应用微生物
CiteScore
7.50
自引率
5.90%
发文量
57
审稿时长
22 days
期刊介绍: Systematic and Applied Microbiology deals with various aspects of microbial diversity and systematics of prokaryotes. It focuses on Bacteria and Archaea; eukaryotic microorganisms will only be considered in rare cases. The journal perceives a broad understanding of microbial diversity and encourages the submission of manuscripts from the following branches of microbiology:
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