Fan Zhang, Hao Peng, Chuanyi Fu, Yidong Deng, Mao Zhang, Wenan Li, Jian Zhong, Qing Zhou, Li Huang, Shuli Xiao, Jiannong Zhao
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Odds ratios (ORs) and 95% confidence intervals (CIs) were calculated by logistic regression analysis to evaluate the associations of three SNPs with stroke susceptibility. Additionally, SNP-SNP interactions were analyzed by multifactor dimensionality reduction (MDR).</p><p><strong>Results: </strong>As demonstrated by the overall analysis, rs9808753 in <i>IFNGR2</i> (allele: OR = 1.25, 95% CI = 1.06-1.47, <i>p</i> = 0.007; homozygous: OR = 1.59, 95% CI = 1.14-2.23, <i>p</i> = 0.007; dominant: OR = 1.31, 95% CI = 1.02-1.67, <i>p</i> = 0.032; recessive: OR = 1.42, 95% CI = 1.05-1.91, <i>p</i> = 0.022; additive: OR = 1.26, 95% CI = 1.07-1.48, <i>p</i> = 0.007) was associated with an increased susceptibility to stroke. Besides, stratification analysis suggested that rs9808753 was associated with an increased risk of stroke in subgroup aged ≤ 64 years, males and drinkers (<i>p</i> < 0.05). And rs1803628 in <i>GAS6</i> was significantly associated with an increased susceptibility to stroke in non-smokers (<i>p</i> < 0.05).</p><p><strong>Conclusion: </strong>A risk-increasing effect of <i>IFNGR2</i> rs980875 on stroke was detected in this study, which further broadens the understanding of the relationship between genetic polymorphisms and stroke susceptibility.</p>","PeriodicalId":56015,"journal":{"name":"Pharmacogenomics & Personalized Medicine","volume":"16 ","pages":"717-727"},"PeriodicalIF":1.8000,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/58/b7/pgpm-16-717.PMC10335315.pdf","citationCount":"0","resultStr":"{\"title\":\"Association Between <i>HTRA1, GAS6</i> and <i>IFNGR2</i> Gene Polymorphisms and Stroke Susceptibility in the Chinese Han Population.\",\"authors\":\"Fan Zhang, Hao Peng, Chuanyi Fu, Yidong Deng, Mao Zhang, Wenan Li, Jian Zhong, Qing Zhou, Li Huang, Shuli Xiao, Jiannong Zhao\",\"doi\":\"10.2147/PGPM.S408911\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background: </strong>Stroke has a high disability rate, and 30% of stroke cases have an unknown cause. 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引用次数: 0
摘要
背景:卒中致残率高,30%的卒中病例病因不明。准确的诊断和治疗需要考虑一些罕见的遗传和非遗传因素。目的:本研究旨在评价3个遗传多态性(HTRA1基因rs369149111、GAS6基因rs1803628、IFNGR2基因rs9808753)对中国汉族人群脑卒中易感性的影响。方法:采用Agena MassARRAY平台对623例脑卒中患者和572例健康对照的3个单核苷酸多态性(snp)进行基因分型。通过logistic回归分析计算优势比(ORs)和95%置信区间(CIs),评估三个snp与卒中易感性的关系。此外,通过多因素降维(MDR)分析SNP-SNP相互作用。结果:综合分析显示,rs9808753在IFNGR2(等位基因:OR = 1.25, 95% CI = 1.06 ~ 1.47, p = 0.007;纯合子:OR = 1.59, 95% CI = 1.14-2.23, p = 0.007;显性:OR = 1.31, 95% CI = 1.02-1.67, p = 0.032;隐性:OR = 1.42, 95% CI = 1.05-1.91, p = 0.022;加性:OR = 1.26, 95% CI = 1.07-1.48, p = 0.007)与卒中易感性增加相关。此外,分层分析显示rs9808753与≤64岁亚组、男性和饮酒者卒中风险增加相关(p < 0.05)。GAS6中rs1803628与非吸烟者卒中易感性增加显著相关(p < 0.05)。结论:本研究检测到IFNGR2 rs980875对脑卒中具有增加风险的作用,进一步拓宽了对遗传多态性与脑卒中易感性关系的认识。
Association Between HTRA1, GAS6 and IFNGR2 Gene Polymorphisms and Stroke Susceptibility in the Chinese Han Population.
Background: Stroke has a high disability rate, and 30% of stroke cases have an unknown cause. Accurate diagnosis and treatment of stroke requires consideration of several rare heritable and non-heritable factors.
Objective: This study aimed to evaluate the impacts of three genetic polymorphisms (rs369149111 in HTRA1, rs1803628 in GAS6 and rs9808753 in IFNGR2) on stroke susceptibility among the Chinese Han population.
Methods: Three single nucleotide polymorphisms (SNPs) from 623 stroke cases and 572 healthy controls were genotyped by the Agena MassARRAY platform. Odds ratios (ORs) and 95% confidence intervals (CIs) were calculated by logistic regression analysis to evaluate the associations of three SNPs with stroke susceptibility. Additionally, SNP-SNP interactions were analyzed by multifactor dimensionality reduction (MDR).
Results: As demonstrated by the overall analysis, rs9808753 in IFNGR2 (allele: OR = 1.25, 95% CI = 1.06-1.47, p = 0.007; homozygous: OR = 1.59, 95% CI = 1.14-2.23, p = 0.007; dominant: OR = 1.31, 95% CI = 1.02-1.67, p = 0.032; recessive: OR = 1.42, 95% CI = 1.05-1.91, p = 0.022; additive: OR = 1.26, 95% CI = 1.07-1.48, p = 0.007) was associated with an increased susceptibility to stroke. Besides, stratification analysis suggested that rs9808753 was associated with an increased risk of stroke in subgroup aged ≤ 64 years, males and drinkers (p < 0.05). And rs1803628 in GAS6 was significantly associated with an increased susceptibility to stroke in non-smokers (p < 0.05).
Conclusion: A risk-increasing effect of IFNGR2 rs980875 on stroke was detected in this study, which further broadens the understanding of the relationship between genetic polymorphisms and stroke susceptibility.
期刊介绍:
Pharmacogenomics and Personalized Medicine is an international, peer-reviewed, open-access journal characterizing the influence of genotype on pharmacology leading to the development of personalized treatment programs and individualized drug selection for improved safety, efficacy and sustainability.
In particular, emphasis will be given to:
Genomic and proteomic profiling
Genetics and drug metabolism
Targeted drug identification and discovery
Optimizing drug selection & dosage based on patient''s genetic profile
Drug related morbidity & mortality intervention
Advanced disease screening and targeted therapeutic intervention
Genetic based vaccine development
Patient satisfaction and preference
Health economic evaluations
Practical and organizational issues in the development and implementation of personalized medicine programs.