胰岛移植物影像专家意见交流移动平台IsletSwipe。

IF 1.9 4区 医学 Q3 ENDOCRINOLOGY & METABOLISM Islets Pub Date : 2023-12-31 DOI:10.1080/19382014.2023.2189873
David Habart, Adam Koza, Ivan Leontovyc, Lucie Kosinova, Zuzana Berkova, Jan Kriz, Klara Zacharovova, Bas Brinkhof, Dirk-Jan Cornelissen, Nicholas Magrane, Katerina Bittenglova, Martin Capek, Jan Valecka, Alena Habartova, František Saudek
{"title":"胰岛移植物影像专家意见交流移动平台IsletSwipe。","authors":"David Habart, Adam Koza, Ivan Leontovyc, Lucie Kosinova, Zuzana Berkova, Jan Kriz, Klara Zacharovova, Bas Brinkhof, Dirk-Jan Cornelissen, Nicholas Magrane, Katerina Bittenglova, Martin Capek, Jan Valecka, Alena Habartova, František Saudek","doi":"10.1080/19382014.2023.2189873","DOIUrl":null,"url":null,"abstract":"<p><p>We previously developed a deep learning-based web service (IsletNet) for an automated counting of isolated pancreatic islets. The neural network training is limited by the absent consensus on the ground truth annotations. Here, we present a platform (IsletSwipe) for an exchange of graphical opinions among experts to facilitate the consensus formation. The platform consists of a web interface and a mobile application. In a small pilot study, we demonstrate the functionalities and the use case scenarios of the platform. Nine experts from three centers validated the drawing tools, tested precision and consistency of the expert contour drawing, and evaluated user experience. Eight experts from two centers proceeded to evaluate additional images to demonstrate the following two use case scenarios. The Validation scenario involves an automated selection of images and islets for the expert scrutiny. It is scalable (more experts, images, and islets may readily be added) and can be applied to independent validation of islet contours from various sources. The Inquiry scenario serves the ground truth generating expert in seeking assistance from peers to achieve consensus on challenging cases during the preparation for IsletNet training. This scenario is limited to a small number of manually selected images and islets. The experts gained an opportunity to influence IsletNet training and to compare other experts' opinions with their own. The ground truth-generating expert obtained feedback for future IsletNet training. IsletSwipe is a suitable tool for the consensus finding. Experts from additional centers are welcome to participate.</p>","PeriodicalId":14671,"journal":{"name":"Islets","volume":"15 1","pages":"2189873"},"PeriodicalIF":1.9000,"publicationDate":"2023-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10064927/pdf/","citationCount":"0","resultStr":"{\"title\":\"IsletSwipe, a mobile platform for expert opinion exchange on islet graft images.\",\"authors\":\"David Habart, Adam Koza, Ivan Leontovyc, Lucie Kosinova, Zuzana Berkova, Jan Kriz, Klara Zacharovova, Bas Brinkhof, Dirk-Jan Cornelissen, Nicholas Magrane, Katerina Bittenglova, Martin Capek, Jan Valecka, Alena Habartova, František Saudek\",\"doi\":\"10.1080/19382014.2023.2189873\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>We previously developed a deep learning-based web service (IsletNet) for an automated counting of isolated pancreatic islets. The neural network training is limited by the absent consensus on the ground truth annotations. Here, we present a platform (IsletSwipe) for an exchange of graphical opinions among experts to facilitate the consensus formation. The platform consists of a web interface and a mobile application. In a small pilot study, we demonstrate the functionalities and the use case scenarios of the platform. Nine experts from three centers validated the drawing tools, tested precision and consistency of the expert contour drawing, and evaluated user experience. Eight experts from two centers proceeded to evaluate additional images to demonstrate the following two use case scenarios. The Validation scenario involves an automated selection of images and islets for the expert scrutiny. It is scalable (more experts, images, and islets may readily be added) and can be applied to independent validation of islet contours from various sources. The Inquiry scenario serves the ground truth generating expert in seeking assistance from peers to achieve consensus on challenging cases during the preparation for IsletNet training. This scenario is limited to a small number of manually selected images and islets. The experts gained an opportunity to influence IsletNet training and to compare other experts' opinions with their own. The ground truth-generating expert obtained feedback for future IsletNet training. IsletSwipe is a suitable tool for the consensus finding. Experts from additional centers are welcome to participate.</p>\",\"PeriodicalId\":14671,\"journal\":{\"name\":\"Islets\",\"volume\":\"15 1\",\"pages\":\"2189873\"},\"PeriodicalIF\":1.9000,\"publicationDate\":\"2023-12-31\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10064927/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Islets\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://doi.org/10.1080/19382014.2023.2189873\",\"RegionNum\":4,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"ENDOCRINOLOGY & METABOLISM\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Islets","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.1080/19382014.2023.2189873","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"ENDOCRINOLOGY & METABOLISM","Score":null,"Total":0}
引用次数: 0

摘要

我们之前开发了一个基于深度学习的web服务(IsletNet),用于对分离的胰岛进行自动计数。神经网络训练受到缺乏对基本事实注释的一致性的限制。在这里,我们提供了一个平台(IsletSwipe),用于专家之间的图形意见交流,以促进共识的形成。该平台由一个web界面和一个移动应用程序组成。在一项小型试点研究中,我们展示了该平台的功能和用例场景。来自三个中心的九名专家验证了绘制工具,测试了专家轮廓图的精度和一致性,并评估了用户体验。来自两个中心的八位专家继续评估额外的图像,以演示以下两个用例场景。验证场景包括自动选择图像和胰岛供专家审查。它是可扩展的(可以很容易地添加更多的专家、图像和胰岛),并且可以应用于各种来源的胰岛轮廓的独立验证。调查场景为生成基本真相的专家提供服务,帮助他们在准备IsletNet培训期间寻求同行的帮助,以就具有挑战性的案件达成共识。这种情况仅限于少量手动选择的图像和小岛。专家们获得了影响IsleNet培训的机会,并将其他专家的意见与自己的意见进行了比较。地面实况生成专家获得了对未来IsleNet培训的反馈。IsletSwipe是达成共识的合适工具。欢迎来自其他中心的专家参加。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

摘要图片

摘要图片

摘要图片

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
IsletSwipe, a mobile platform for expert opinion exchange on islet graft images.

We previously developed a deep learning-based web service (IsletNet) for an automated counting of isolated pancreatic islets. The neural network training is limited by the absent consensus on the ground truth annotations. Here, we present a platform (IsletSwipe) for an exchange of graphical opinions among experts to facilitate the consensus formation. The platform consists of a web interface and a mobile application. In a small pilot study, we demonstrate the functionalities and the use case scenarios of the platform. Nine experts from three centers validated the drawing tools, tested precision and consistency of the expert contour drawing, and evaluated user experience. Eight experts from two centers proceeded to evaluate additional images to demonstrate the following two use case scenarios. The Validation scenario involves an automated selection of images and islets for the expert scrutiny. It is scalable (more experts, images, and islets may readily be added) and can be applied to independent validation of islet contours from various sources. The Inquiry scenario serves the ground truth generating expert in seeking assistance from peers to achieve consensus on challenging cases during the preparation for IsletNet training. This scenario is limited to a small number of manually selected images and islets. The experts gained an opportunity to influence IsletNet training and to compare other experts' opinions with their own. The ground truth-generating expert obtained feedback for future IsletNet training. IsletSwipe is a suitable tool for the consensus finding. Experts from additional centers are welcome to participate.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Islets
Islets ENDOCRINOLOGY & METABOLISM-
CiteScore
3.30
自引率
4.50%
发文量
10
审稿时长
>12 weeks
期刊介绍: Islets is the first international, peer-reviewed research journal dedicated to islet biology. Islets publishes high-quality clinical and experimental research into the physiology and pathology of the islets of Langerhans. In addition to original research manuscripts, Islets is the leading source for cutting-edge Perspectives, Reviews and Commentaries. Our goal is to foster communication and a rapid exchange of information through timely publication of important results using print as well as electronic formats.
期刊最新文献
3D evaluation of the extracellular matrix of hypoxic pancreatic islets using light sheet fluorescence microscopy. Serum from pregnant donors induces human beta cell proliferation. Characterizing the effects of Dechlorane Plus on β-cells: a comparative study across models and species. Decreased islet amyloid polypeptide staining in the islets of insulinoma patients. Human research islet cell culture outcomes at the Alberta Diabetes Institute IsletCore.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1