集体运动随机动力学方程的数据驱动发现。

IF 2 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Physical biology Pub Date : 2023-07-17 DOI:10.1088/1478-3975/ace22d
Arshed Nabeel, Vivek Jadhav, Danny Raj M, Clément Sire, Guy Theraulaz, Ramón Escobedo, Srikanth K Iyer, Vishwesha Guttal
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引用次数: 1

摘要

对群集系统的集体运动的粗粒度描述通常是在宏观或热力学极限下推导出来的。然而,许多实际鸟群的规模落在“介观”尺度(10到100只),其中由有限鸟群规模引起的随机性是重要的。以往对介观模型的研究主要集中在非空间模型上。开发中观尺度方程,通常以随机微分方程的形式,即使是最简单的明确解释空间的集体运动模型也可能具有挑战性。为了解决这一差距,我们采用了一种新的数据驱动方程学习方法来构建一个简单的、空间的、自推进粒子(SPP)集体运动模型的随机介观描述。在空间模型中,焦点个体可以在交互半径内与随机选择的邻居交互。我们考虑k = 1(称为随机成对相互作用),k = 2(随机三元相互作用),并在相互作用半径内相等所有可用的邻居(相当于Vicsek-like局部平均)。对于随机两两相互作用模型,数据驱动的介观方程表明,集体顺序是由一个乘法噪声项驱动的(因此称为噪声诱导的群集)。相比之下,对于高阶相互作用(k > 1),包括Vicsek-like平均相互作用,模型产生由确定性和随机力组合驱动的集体顺序。我们发现描述动力学的介观方程参数与种群大小之间的关系对密度和相互作用半径很敏感,表现出偏离平均场理论期望。我们提供了半解析的论证,可能解释这些观察到的偏差。总之,我们的研究强调了群集系统的介观描述的重要性,并展示了数据驱动方程发现方法在复杂系统研究中的潜力。
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Data-driven discovery of stochastic dynamical equations of collective motion.

Coarse-grained descriptions of collective motion of flocking systems are often derived for the macroscopic or the thermodynamic limit. However, the size of many real flocks falls within 'mesoscopic' scales (10 to 100 individuals), where stochasticity arising from the finite flock sizes is important. Previous studies on mesoscopic models have typically focused on non-spatial models. Developing mesoscopic scale equations, typically in the form of stochastic differential equations, can be challenging even for the simplest of the collective motion models that explicitly account for space. To address this gap, here, we take a novel data-driven equation learning approach to construct the stochastic mesoscopic descriptions of a simple, spatial, self-propelled particle (SPP) model of collective motion. In the spatial model, a focal individual can interact withkrandomly chosen neighbours within an interaction radius. We considerk = 1 (called stochastic pairwise interactions),k = 2 (stochastic ternary interactions), andkequalling all available neighbours within the interaction radius (equivalent to Vicsek-like local averaging). For the stochastic pairwise interaction model, the data-driven mesoscopic equations reveal that the collective order is driven by a multiplicative noise term (hence termed, noise-induced flocking). In contrast, for higher order interactions (k > 1), including Vicsek-like averaging interactions, models yield collective order driven by a combination of deterministic and stochastic forces. We find that the relation between the parameters of the mesoscopic equations describing the dynamics and the population size are sensitive to the density and to the interaction radius, exhibiting deviations from mean-field theoretical expectations. We provide semi-analytic arguments potentially explaining these observed deviations. In summary, our study emphasises the importance of mesoscopic descriptions of flocking systems and demonstrates the potential of the data-driven equation discovery methods for complex systems studies.

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来源期刊
Physical biology
Physical biology 生物-生物物理
CiteScore
4.20
自引率
0.00%
发文量
50
审稿时长
3 months
期刊介绍: Physical Biology publishes articles in the broad interdisciplinary field bridging biology with the physical sciences and engineering. This journal focuses on research in which quantitative approaches – experimental, theoretical and modeling – lead to new insights into biological systems at all scales of space and time, and all levels of organizational complexity. Physical Biology accepts contributions from a wide range of biological sub-fields, including topics such as: molecular biophysics, including single molecule studies, protein-protein and protein-DNA interactions subcellular structures, organelle dynamics, membranes, protein assemblies, chromosome structure intracellular processes, e.g. cytoskeleton dynamics, cellular transport, cell division systems biology, e.g. signaling, gene regulation and metabolic networks cells and their microenvironment, e.g. cell mechanics and motility, chemotaxis, extracellular matrix, biofilms cell-material interactions, e.g. biointerfaces, electrical stimulation and sensing, endocytosis cell-cell interactions, cell aggregates, organoids, tissues and organs developmental dynamics, including pattern formation and morphogenesis physical and evolutionary aspects of disease, e.g. cancer progression, amyloid formation neuronal systems, including information processing by networks, memory and learning population dynamics, ecology, and evolution collective action and emergence of collective phenomena.
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