人类萨波病毒株基因型在日本过去四十年的分布:全球视角。

IF 1.3 4区 医学 Q4 INFECTIOUS DISEASES Japanese journal of infectious diseases Pub Date : 2023-07-24 DOI:10.7883/yoken.JJID.2022.704
Yen Hai Doan, Yasutaka Yamashita, Hiroto Shinomiya, Takumi Motoya, Naomi Sakon, Rieko Suzuki, Hideaki Shimizu, Naoki Shigemoto, Seiya Harada, Shunsuke Yahiro, Kyoko Tomioka, Akie Sakagami, Yo Ueki, Rika Komagome, Kyohei Saka, Reiko Okamoto-Nakagawa, Komei Shirabe, Fuminori Mizukoshi, Yono Arita, Kei Haga, Kazuhiko Katayama, Hirokazu Kimura, Masamichi Muramatsu, Tomoichiro Oka
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引用次数: 2

摘要

萨波病毒(SaV)感染是一个公共卫生问题,因为它们在所有年龄段的人中引起急性胃肠炎,既有零星的,也有暴发的。然而,只有有限数量的SaV序列信息,特别是所有SaV基因型的全基因组序列是公开的。因此,在本研究中,我们确定了日本13个县2001年至2015年季节138个sav的全/近全长基因组序列。GI基因组占主导地位(67%,n = 92),其次是GII基因组(18%,n = 25)、GIV基因组(9%,n = 12)和GV基因组(6%,n = 9)。在GI基因组中,鉴定出四种不同的基因型:GI.1 (n = 44)、GI.2 (n = 40)、GI.3 (n = 7)和GI.5 (n = 1)。然后,我们将这些日本SaV序列与过去46年来从49个国家收集的3119个公开的人类SaV序列进行了比较。结果表明,GI.1和GI.2在至少40年的时间里一直是日本以及其他国家的主要基因型。新确定的138个日本SaV序列和现有的SaV序列,有助于更好地了解SaV基因型的进化模式。
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Distribution of Human Sapovirus Strain Genotypes over the Last Four Decades in Japan: a Global Perspective.

Sapovirus (SaV) infections are a public health problem because they cause acute gastroenteritis in humans of all ages, both sporadically and as outbreaks. However, only a limited amount of SaV sequence information, especially whole-genome sequences for all the SaV genotypes, is publicly available. Therefore, in this study, we determined the full/near-full-length genomic sequences of 138 SaVs from the 2001 to 2015 seasons in 13 prefectures across Japan. The genogroup GI was predominant (67%, n = 92), followed by genogroups GII (18%, n = 25), GIV (9%, n = 12), and GV (6%, n = 9). Within the GI genogroup, four different genotypes were identified: GI.1 (n = 44), GI.2 (n = 40), GI.3 (n = 7), and GI.5 (n = 1). We then compared these Japanese SaV sequences with 3,119 publicly available human SaV sequences collected from 49 countries over the last 46 years. The results indicated that GI.1, and GI.2 have been the predominant genotypes in Japan, as well as in other countries, over at least four decades. The 138 newly determined Japanese SaV sequences together with the currently available SaV sequences, could facilitate a better understanding of the evolutionary patterns of SaV genotypes.

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来源期刊
CiteScore
4.50
自引率
4.50%
发文量
172
审稿时长
2 months
期刊介绍: Japanese Journal of Infectious Diseases (JJID), an official bimonthly publication of National Institute of Infectious Diseases, Japan, publishes papers dealing with basic research on infectious diseases relevant to humans in the fields of bacteriology, virology, mycology, parasitology, medical entomology, vaccinology, and toxinology. Pathology, immunology, biochemistry, and blood safety related to microbial pathogens are among the fields covered. Sections include: original papers, short communications, epidemiological reports, methods, laboratory and epidemiology communications, letters to the editor, and reviews.
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