动脉粥样硬化的新型杯突相关诊断基因特征和差异表达验证。

IF 6.3 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Molecular biomedicine Pub Date : 2023-07-14 DOI:10.1186/s43556-023-00131-5
Yuting Cui, Yanyu Chen, Ni Gan, Man Li, Wei Liao, Yating Zhou, Qiong Xiang, Xi Gong, Qianqian Guo, Pengwei Hu, Xi-Long Zheng, Desi Shang, Juan Peng, Zhihan Tang
{"title":"动脉粥样硬化的新型杯突相关诊断基因特征和差异表达验证。","authors":"Yuting Cui, Yanyu Chen, Ni Gan, Man Li, Wei Liao, Yating Zhou, Qiong Xiang, Xi Gong, Qianqian Guo, Pengwei Hu, Xi-Long Zheng, Desi Shang, Juan Peng, Zhihan Tang","doi":"10.1186/s43556-023-00131-5","DOIUrl":null,"url":null,"abstract":"<p><p>Atherosclerosis (AS) is a major contributor to morbidity and mortality worldwide. However, the molecular mechanisms and mediator molecules involved remain largely unknown. Copper, which plays an essential role in cardiovascular disease, has been suggested as a potential risk factor. Copper homeostasis is closely related to the occurrence and development of AS. Recently, a new cell death pathway called cuproptosis has been discovered, which is driven by intracellular copper excess. However, no previous studies have reported a relationship between cuproptosis and AS. In this study, we integrated bulk and single-cell sequencing data to screen and identify key cuproptosis-related genes in AS. We used correlation analysis, enrichment analysis, random forest, and other bioinformatics methods to reveal their relationships. Our findings report, for the first time, the involvement of cuproptosis-related genes FDX1, SLC31A1, and GLS in atherogenesis. FDX1 and SLC31A1 were upregulated, while GLS was downregulated in atherosclerotic plaque. Receiver operating characteristic curves demonstrate their potential diagnostic value for AS. Additionally, we confirm that GLS is mainly expressed in vascular smooth muscle cells, and SLC31A1 is mainly localized in macrophages of atherosclerotic lesions in experiments. These findings shed light on the cuproptosis landscape and potential diagnostic biomarkers for AS, providing further evidence about the vital role of cuproptosis in atherosclerosis progression.</p>","PeriodicalId":74218,"journal":{"name":"Molecular biomedicine","volume":null,"pages":null},"PeriodicalIF":6.3000,"publicationDate":"2023-07-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10344858/pdf/","citationCount":"0","resultStr":"{\"title\":\"A novel cuproptosis-related diagnostic gene signature and differential expression validation in atherosclerosis.\",\"authors\":\"Yuting Cui, Yanyu Chen, Ni Gan, Man Li, Wei Liao, Yating Zhou, Qiong Xiang, Xi Gong, Qianqian Guo, Pengwei Hu, Xi-Long Zheng, Desi Shang, Juan Peng, Zhihan Tang\",\"doi\":\"10.1186/s43556-023-00131-5\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Atherosclerosis (AS) is a major contributor to morbidity and mortality worldwide. However, the molecular mechanisms and mediator molecules involved remain largely unknown. Copper, which plays an essential role in cardiovascular disease, has been suggested as a potential risk factor. Copper homeostasis is closely related to the occurrence and development of AS. Recently, a new cell death pathway called cuproptosis has been discovered, which is driven by intracellular copper excess. However, no previous studies have reported a relationship between cuproptosis and AS. In this study, we integrated bulk and single-cell sequencing data to screen and identify key cuproptosis-related genes in AS. We used correlation analysis, enrichment analysis, random forest, and other bioinformatics methods to reveal their relationships. Our findings report, for the first time, the involvement of cuproptosis-related genes FDX1, SLC31A1, and GLS in atherogenesis. FDX1 and SLC31A1 were upregulated, while GLS was downregulated in atherosclerotic plaque. Receiver operating characteristic curves demonstrate their potential diagnostic value for AS. Additionally, we confirm that GLS is mainly expressed in vascular smooth muscle cells, and SLC31A1 is mainly localized in macrophages of atherosclerotic lesions in experiments. These findings shed light on the cuproptosis landscape and potential diagnostic biomarkers for AS, providing further evidence about the vital role of cuproptosis in atherosclerosis progression.</p>\",\"PeriodicalId\":74218,\"journal\":{\"name\":\"Molecular biomedicine\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":6.3000,\"publicationDate\":\"2023-07-14\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10344858/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Molecular biomedicine\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1186/s43556-023-00131-5\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Molecular biomedicine","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1186/s43556-023-00131-5","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

动脉粥样硬化(AS)是导致全球发病率和死亡率的一个主要因素。然而,其中涉及的分子机制和介质分子在很大程度上仍不为人知。铜在心血管疾病中扮演着重要角色,被认为是一个潜在的风险因素。铜的平衡与强直性脊柱炎的发生和发展密切相关。最近,人们发现了一种新的细胞死亡途径--铜中毒(cuproptosis),它是由细胞内铜过量驱动的。然而,以前的研究还没有报道杯突与强直性脊柱炎之间的关系。在这项研究中,我们整合了大量数据和单细胞测序数据,筛选并鉴定了强直性脊柱炎中与杯突症相关的关键基因。我们使用了相关性分析、富集分析、随机森林和其他生物信息学方法来揭示它们之间的关系。我们的研究结果首次报道了杯突相关基因FDX1、SLC31A1和GLS参与了动脉粥样硬化的发生。在动脉粥样硬化斑块中,FDX1 和 SLC31A1 上调,而 GLS 下调。接收操作特征曲线显示了它们对强直性脊柱炎的潜在诊断价值。此外,我们还在实验中证实 GLS 主要在血管平滑肌细胞中表达,而 SLC31A1 则主要定位于动脉粥样硬化病变的巨噬细胞中。这些发现揭示了杯突症的情况和强直性脊柱炎的潜在诊断生物标志物,为杯突症在动脉粥样硬化进展中的重要作用提供了进一步的证据。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

摘要图片

摘要图片

摘要图片

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
A novel cuproptosis-related diagnostic gene signature and differential expression validation in atherosclerosis.

Atherosclerosis (AS) is a major contributor to morbidity and mortality worldwide. However, the molecular mechanisms and mediator molecules involved remain largely unknown. Copper, which plays an essential role in cardiovascular disease, has been suggested as a potential risk factor. Copper homeostasis is closely related to the occurrence and development of AS. Recently, a new cell death pathway called cuproptosis has been discovered, which is driven by intracellular copper excess. However, no previous studies have reported a relationship between cuproptosis and AS. In this study, we integrated bulk and single-cell sequencing data to screen and identify key cuproptosis-related genes in AS. We used correlation analysis, enrichment analysis, random forest, and other bioinformatics methods to reveal their relationships. Our findings report, for the first time, the involvement of cuproptosis-related genes FDX1, SLC31A1, and GLS in atherogenesis. FDX1 and SLC31A1 were upregulated, while GLS was downregulated in atherosclerotic plaque. Receiver operating characteristic curves demonstrate their potential diagnostic value for AS. Additionally, we confirm that GLS is mainly expressed in vascular smooth muscle cells, and SLC31A1 is mainly localized in macrophages of atherosclerotic lesions in experiments. These findings shed light on the cuproptosis landscape and potential diagnostic biomarkers for AS, providing further evidence about the vital role of cuproptosis in atherosclerosis progression.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
6.30
自引率
0.00%
发文量
0
审稿时长
10 weeks
期刊最新文献
T cell receptor repertoire characteristics and therapeutic potential of tumor infiltrating lymphocytes (TILs) derived from metastatic lymph node in cervical cancer. Decorin-armed oncolytic adenovirus promotes natural killers (NKs) activation and infiltration to enhance NK therapy in CRC model. Post-translational modifications of fibrinogen: implications for clotting, fibrin structure and degradation. Systemic lupus erythematosus: pathogenesis and targeted therapy. The functions of apolipoproteins and lipoproteins in health and disease.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1