癌症中瞬时受体电位通道基因的广泛转录组变化。

IF 2.5 3区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Briefings in Functional Genomics Pub Date : 2024-05-15 DOI:10.1093/bfgp/elad023
Tao Pan, Yueying Gao, Gang Xu, Lei Yu, Qi Xu, Jinyang Yu, Meng Liu, Can Zhang, Yanlin Ma, Yongsheng Li
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引用次数: 0

摘要

离子通道,尤其是瞬态受体电位(TRP)通道,是在许多生理过程中发挥重要作用的基本基因。新的证据表明,TRP 基因与多种疾病(包括各种癌症)有关。然而,我们对不同癌症类型中 TRP 基因的表达改变情况仍然缺乏了解。在这篇综述中,我们全面回顾和总结了来自 33 种癌症类型 10,000 多个样本的转录组。我们发现,TRP基因在癌症中广泛存在转录组失调,这与癌症患者的临床生存率有关。TRP基因的干扰与不同癌症类型中的一些癌症通路有关。此外,我们还回顾了近期研究中报道的 TRP 家族基因改变在多种疾病中的功能。总之,我们的研究全面回顾了具有广泛转录组学改变的TRP基因及其功能,这将直接有助于癌症治疗和精准医疗。
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Widespread transcriptomic alterations of transient receptor potential channel genes in cancer.

Ion channels, in particular transient-receptor potential (TRP) channels, are essential genes that play important roles in many physiological processes. Emerging evidence has demonstrated that TRP genes are involved in a number of diseases, including various cancer types. However, we still lack knowledge about the expression alterations landscape of TRP genes across cancer types. In this review, we comprehensively reviewed and summarised the transcriptomes from more than 10 000 samples in 33 cancer types. We found that TRP genes were widespreadly transcriptomic dysregulated in cancer, which was associated with clinical survival of cancer patients. Perturbations of TRP genes were associated with a number of cancer pathways across cancer types. Moreover, we reviewed the functions of TRP family gene alterations in a number of diseases reported in recent studies. Taken together, our study comprehensively reviewed TRP genes with extensive transcriptomic alterations and their functions will directly contribute to cancer therapy and precision medicine.

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来源期刊
Briefings in Functional Genomics
Briefings in Functional Genomics BIOTECHNOLOGY & APPLIED MICROBIOLOGY-GENETICS & HEREDITY
CiteScore
6.30
自引率
2.50%
发文量
37
审稿时长
6-12 weeks
期刊介绍: Briefings in Functional Genomics publishes high quality peer reviewed articles that focus on the use, development or exploitation of genomic approaches, and their application to all areas of biological research. As well as exploring thematic areas where these techniques and protocols are being used, articles review the impact that these approaches have had, or are likely to have, on their field. Subjects covered by the Journal include but are not restricted to: the identification and functional characterisation of coding and non-coding features in genomes, microarray technologies, gene expression profiling, next generation sequencing, pharmacogenomics, phenomics, SNP technologies, transgenic systems, mutation screens and genotyping. Articles range in scope and depth from the introductory level to specific details of protocols and analyses, encompassing bacterial, fungal, plant, animal and human data. The editorial board welcome the submission of review articles for publication. Essential criteria for the publication of papers is that they do not contain primary data, and that they are high quality, clearly written review articles which provide a balanced, highly informative and up to date perspective to researchers in the field of functional genomics.
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