两种新型动脉粥样硬化性主动脉瘤生物标志物profilin 1和补体因子D的血清蛋白质组学鉴定和验证。

IF 2.1 3区 生物学 Q3 BIOCHEMICAL RESEARCH METHODS Proteome Science Pub Date : 2023-08-05 DOI:10.1186/s12953-023-00212-x
Yusuke Murakami, Mitsuhiro Nishigori, Hiroaki Yagi, Tsukasa Osaki, Masaki Wakabayashi, Manabu Shirai, Cheol Son, Yutaka Iba, Kenji Minatoya, Kengo Kusano, Tsutomu Tomita, Hatsue Ishibashi-Ueda, Hitoshi Matsuda, Naoto Minamino
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引用次数: 0

摘要

背景:由于动脉瘤的早期发现和破裂风险评估可以为药物治疗和预防治疗提供见解,因此需要在血液检查中检测到的有效的主动脉瘤诊断生物标志物。然而,已知的AA生物标志物在临床诊断中缺乏特异性和可靠性。方法:我们对动脉粥样硬化性胸AA (TAA)患者和健康对照(HC)受试者的血清样本进行蛋白质组学分析,以确定AA的诊断生物标志物。将血清样品分离成低密度脂蛋白、高密度脂蛋白和蛋白质部分,主要蛋白质被耗尽。从三个部分中鉴定的蛋白质中,我们将候选生物标志物缩小到TAA和HC患者之间所有部分中均匀改变的蛋白质,并使用受试者工作特征(ROC)分析评估它们区分TAA患者和腹部AA (AAA)患者的能力。为了临床验证,在同一研究所生物库中登记的TAA和AAA患者中测量了候选生物标志物的血清浓度,并评估了它们的诊断能力。结果:Profilin 1 (PFN1)和补体因子D (CFD)在TAA和HC患者的所有三个部分中表现出最明显的差异,并被选为候选生物标志物。与HC患者相比,TAA和AAA患者血清中PFN1浓度降低,而CFD浓度升高。ROC分析显示,这些蛋白可以区分TAA和AAA患者与HC患者。在验证研究中,这些候选药物在TAA或AAA患者与对照组之间显示出显著的浓度差异。PFN1和CFD在ROC分析中显示出足够的曲线下面积(AUC),两者结合进一步提高了AUC。在验证研究中,主动脉夹层患者的血清PFN1和CFD浓度也与对照组有显著差异。结论:PFN1和CFD是TAA和AAA潜在的诊断性生物标志物,可在血液样本中检测到;他们的诊断性能可以通过他们的组合来增强。这些生物标志物可能有助于发展诊断系统来识别AA患者。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Serum proteomic identification and validation of two novel atherosclerotic aortic aneurysm biomarkers, profilin 1 and complement factor D.

Background: Effective diagnostic biomarkers for aortic aneurysm (AA) that are detectable in blood tests are required because early detection and rupture risk assessment of AA can provide insights into medical therapy and preventive treatments. However, known biomarkers for AA lack specificity and reliability for clinical diagnosis.

Methods: We performed proteome analysis of serum samples from patients with atherosclerotic thoracic AA (TAA) and healthy control (HC) subjects to identify diagnostic biomarkers for AA. Serum samples were separated into low-density lipoprotein, high-density lipoprotein, and protein fractions, and the major proteins were depleted. From the proteins identified in the three fractions, we narrowed down biomarker candidates to proteins uniformly altered in all fractions between patients with TAA and HC subjects and evaluated their capability to discriminate patients with TAA and those with abdominal AA (AAA) from HC subjects using receiver operating characteristic (ROC) analysis. For the clinical validation, serum concentrations of biomarker candidates were measured in patients with TAA and AAA registered in the biobank of the same institute, and their capability for the diagnosis was evaluated.

Results: Profilin 1 (PFN1) and complement factor D (CFD) showed the most contrasting profiles in all three fractions between patients with TAA and HC subjects and were selected as biomarker candidates. The PFN1 concentration decreased, whereas the CFD concentration increased in the sera of patients with TAA and AAA when compared with those of HC subjects. The ROC analysis showed that these proteins could discriminate patients with TAA and AAA from HC subjects. In the validation study, these candidates showed significant concentration differences between patients with TAA or AAA and controls. PFN1 and CFD showed sufficient area under the curve (AUC) in the ROC analysis, and their combination further increased the AUC. The serum concentrations of PFN1 and CFD also showed significant differences between patients with aortic dissection and controls in the validation study.

Conclusion: PFN1 and CFD are potential diagnostic biomarkers for TAA and AAA and measurable in blood samples; their diagnostic performance can be augmented by their combination. These biomarkers may facilitate the development of diagnostic systems to identify patients with AA.

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来源期刊
Proteome Science
Proteome Science 生物-生化研究方法
CiteScore
2.90
自引率
0.00%
发文量
17
审稿时长
4.5 months
期刊介绍: Proteome Science is an open access journal publishing research in the area of systems studies. Proteome Science considers manuscripts based on all aspects of functional and structural proteomics, genomics, metabolomics, systems analysis and metabiome analysis. It encourages the submissions of studies that use large-scale or systems analysis of biomolecules in a cellular, organismal and/or environmental context. Studies that describe novel biological or clinical insights as well as methods-focused studies that describe novel methods for the large-scale study of any and all biomolecules in cells and tissues, such as mass spectrometry, protein and nucleic acid microarrays, genomics, next-generation sequencing and computational algorithms and methods are all within the scope of Proteome Science, as are electron topography, structural methods, proteogenomics, chemical proteomics, stem cell proteomics, organelle proteomics, plant and microbial proteomics. In spite of its name, Proteome Science considers all aspects of large-scale and systems studies because ultimately any mechanism that results in genomic and metabolomic changes will affect or be affected by the proteome. To reflect this intrinsic relationship of biological systems, Proteome Science will consider all such articles.
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