Arthropods are kin: Operationalizing Indigenous data sovereignty to respectfully utilize genomic data from Indigenous lands.

IF 5.5 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Molecular Ecology Resources Pub Date : 2025-02-01 Epub Date: 2023-07-17 DOI:10.1111/1755-0998.13822
Leke Hutchins, Ann Mc Cartney, Natalie Graham, Rosemary Gillespie, Aidee Guzman
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Abstract

Indigenous peoples have cultivated biodiverse agroecosystems since time immemorial. The rise of metagenomics and high-throughput sequencing technologies in biodiversity studies has rapidly expanded the scale of data collection from these lands. A respectful approach to the data life cycle grounded in the sovereignty of indigenous communities is imperative to not perpetuate harm. In this paper, we operationalize an indigenous data sovereignty (IDS) framework to outline realistic considerations for genomic data that span data collection, governance, and communication. As a case study for this framework, we use arthropod genomic data collected from diversified and simplified farm sites close to and far from natural habitats within a historic Kānaka 'Ōiwi (Indigenous Hawaiian) agroecosystem. Diversified sites had the highest Operational Taxonomic Unit (OTU) richness for native and introduced arthropods. There may be a significant spillover effect between forest and farm sites, as farm sites near a natural habitat had higher OTU richness than those farther away. We also provide evidence that management factors such as the number of Polynesian crops cultivated may drive arthropod community composition. Through this case study, we emphasize the context-dependent opportunities and challenges for operationalizing IDS by utilizing participatory research methods, expanding novel data management tools through the Local Contexts Hub, and developing and nurturing community partnerships-all while highlighting the potential of agroecosystems for arthropod conservation. Overall, the workflow and the example presented here can help researchers take tangible steps to achieve IDS, which often seems elusive with the expanding use of genomic data.

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节肢动物是近亲:实现土著数据主权,尊重地利用土著土地上的基因组数据。
自古以来,土著人民就培育了生物多样性的农业生态系统。生物多样性研究中宏基因组学和高通量测序技术的兴起迅速扩大了这些土地的数据收集规模。对基于土著社区主权的数据生命周期采取尊重的做法是必要的,以避免造成长期损害。在本文中,我们实施了一个本地数据主权(IDS)框架,概述了跨越数据收集、治理和通信的基因组数据的现实考虑因素。作为该框架的案例研究,我们使用了从历史上Kānaka 'Ōiwi(夏威夷土著)农业生态系统中靠近或远离自然栖息地的多样化和简化的农场遗址收集的节肢动物基因组数据。不同地点的本地节肢动物和引进节肢动物的操作分类单元(OTU)丰富度最高。森林和农场站点之间可能存在显著的溢出效应,因为靠近自然栖息地的农场站点的OTU丰富度高于远离自然栖息地的农场站点。我们还提供证据表明,诸如波利尼西亚作物种植数量等管理因素可能会驱动节肢动物群落组成。通过本案例研究,我们强调了利用参与式研究方法、通过Local Contexts Hub扩展新型数据管理工具以及发展和培育社区伙伴关系来实施IDS所面临的机遇和挑战,同时强调了农业生态系统在节肢动物保护方面的潜力。总的来说,这里提供的工作流程和示例可以帮助研究人员采取切实的步骤来实现IDS,随着基因组数据的扩展使用,IDS通常看起来难以实现。
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来源期刊
Molecular Ecology Resources
Molecular Ecology Resources 生物-进化生物学
CiteScore
15.60
自引率
5.20%
发文量
170
审稿时长
3 months
期刊介绍: Molecular Ecology Resources promotes the creation of comprehensive resources for the scientific community, encompassing computer programs, statistical and molecular advancements, and a diverse array of molecular tools. Serving as a conduit for disseminating these resources, the journal targets a broad audience of researchers in the fields of evolution, ecology, and conservation. Articles in Molecular Ecology Resources are crafted to support investigations tackling significant questions within these disciplines. In addition to original resource articles, Molecular Ecology Resources features Reviews, Opinions, and Comments relevant to the field. The journal also periodically releases Special Issues focusing on resource development within specific areas.
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More than dirt: Sedimentary ancient DNA and Indigenous Australia. Whole genome sequencing of Penicillium and Burkholderia strains antagonistic to the causal agent of kauri dieback disease (Phytophthora agathidicida) reveals biosynthetic gene clusters related to antimicrobial secondary metabolites. Arthropods are kin: Operationalizing Indigenous data sovereignty to respectfully utilize genomic data from Indigenous lands. Fish germ cell cryobanking and transplanting for conservation. Monitoring environmental microbiomes: Alignment of microbiology and computational biology competencies within a culturally integrated curriculum and research framework.
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