Mixture survival trees for cancer risk classification.

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Accounts of Chemical Research Pub Date : 2022-07-01 DOI:10.1007/s10985-022-09552-w
Beilin Jia, Donglin Zeng, Jason J Z Liao, Guanghan F Liu, Xianming Tan, Guoqing Diao, Joseph G Ibrahim
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Abstract

In oncology studies, it is important to understand and characterize disease heterogeneity among patients so that patients can be classified into different risk groups and one can identify high-risk patients at the right time. This information can then be used to identify a more homogeneous patient population for developing precision medicine. In this paper, we propose a mixture survival tree approach for direct risk classification. We assume that the patients can be classified into a pre-specified number of risk groups, where each group has distinct survival profile. Our proposed tree-based methods are devised to estimate latent group membership using an EM algorithm. The observed data log-likelihood function is used as the splitting criterion in recursive partitioning. The finite sample performance is evaluated by extensive simulation studies and the proposed method is illustrated by a case study in breast cancer.

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用于癌症风险分类的混合生存树。
在肿瘤学研究中,了解和表征患者之间的疾病异质性是非常重要的,这样可以将患者划分为不同的风险组,并在适当的时候识别出高危患者。然后,这些信息可以用于确定更均匀的患者群体,以开发精准医疗。本文提出了一种用于直接风险分类的混合生存树方法。我们假设患者可以被分为预先指定的风险组,其中每组有不同的生存概况。我们提出的基于树的方法是设计来估计潜在的群体成员使用EM算法。将观测数据的对数似然函数作为递归划分的分割准则。有限样本的性能通过广泛的模拟研究进行了评估,并提出了一种方法,说明了一个案例研究在乳腺癌。
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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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