A genome assembly of the Yuma myotis bat, Myotis yumanensis.

IF 3 2区 生物学 Q2 EVOLUTIONARY BIOLOGY Journal of Heredity Pub Date : 2024-02-03 DOI:10.1093/jhered/esad053
Joseph N Curti, Devaughn Fraser, Merly Escalona, Colin W Fairbairn, Samuel Sacco, Ruta Sahasrabudhe, Oanh Nguyen, William Seligmann, Peter H Sudmant, Erin Toffelmier, Juan Manuel Vazquez, Robert Wayne, H Bradley Shaffer, Michael R Buchalski
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Abstract

The Yuma myotis bat (Myotis yumanensis) is a small vespertilionid bat and one of 52 species of new world Myotis bats in the subgenus Pizonyx. While M. yumanensis populations currently appear relatively stable, it is one of 12 bat species known or suspected to be susceptible to white-nose syndrome, the fungal disease causing declines in bat populations across North America. Only two of these 12 species have genome resources available, which limits the ability of resource managers to use genomic techniques to track the responses of bat populations to white-nose syndrome generally. Here we present the first de novo genome assembly for Yuma myotis, generated as a part of the California Conservation Genomics Project. The M. yumanensis genome was generated using a combination of PacBio HiFi long reads and Omni-C chromatin-proximity sequencing technology. This high-quality genome is one of the most complete bat assemblies available, with a contig N50 of 28.03 Mb, scaffold N50 of 99.14 Mb, and BUSCO completeness score of 93.7%. The Yuma myotis genome provides a high-quality resource that will aid in comparative genomic and evolutionary studies, as well as inform conservation management related to white-nose syndrome.

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尤马麝香蝙蝠(Myotis yumanensis)的基因组组装。
尤马麝香蝙蝠(Myotis yumanensis)是一种小型吠形目蝙蝠,也是新世界麝香蝙蝠亚属(Pizonyx)的 52 个物种之一。虽然尤曼蝠种群目前看起来相对稳定,但它是已知或疑似易感染白鼻综合征的 12 种蝙蝠之一,白鼻综合征是一种真菌疾病,导致北美蝙蝠种群数量下降。在这 12 个物种中,只有两个物种有基因组资源,这限制了资源管理者利用基因组技术追踪蝙蝠种群对白鼻综合征的反应的能力。在这里,我们展示了作为加利福尼亚保护基因组学项目的一部分而产生的尤马蝙蝠的首个全新基因组组装。玉马蝠基因组是利用 PacBio HiFi 长读数和 Omni-C 染色质邻近性测序技术组合生成的。该高质量基因组是目前最完整的蝙蝠基因组之一,等位基因N50为28.03 Mb,支架N50为99.14 Mb,BUSCO完整性得分为93.7%。尤马麝香蝙蝠基因组提供了高质量的资源,将有助于基因组比较和进化研究,并为白鼻综合症相关的保护管理提供信息。
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来源期刊
Journal of Heredity
Journal of Heredity 生物-遗传学
CiteScore
5.20
自引率
6.50%
发文量
63
审稿时长
6-12 weeks
期刊介绍: Over the last 100 years, the Journal of Heredity has established and maintained a tradition of scholarly excellence in the publication of genetics research. Virtually every major figure in the field has contributed to the journal. Established in 1903, Journal of Heredity covers organismal genetics across a wide range of disciplines and taxa. Articles include such rapidly advancing fields as conservation genetics of endangered species, population structure and phylogeography, molecular evolution and speciation, molecular genetics of disease resistance in plants and animals, genetic biodiversity and relevant computer programs.
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