Dusk2Dawn: an EEGLAB plugin for automatic cleaning of whole-night sleep electroencephalogram using Artifact Subspace Reconstruction.

IF 5.3 2区 医学 Q1 CLINICAL NEUROLOGY Sleep Pub Date : 2023-12-11 DOI:10.1093/sleep/zsad208
Richard Somervail, Jacinthe Cataldi, Aurélie M Stephan, Francesca Siclari, Gian Domenico Iannetti
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Abstract

Whole-night sleep electroencephalogram (EEG) is plagued by several types of large-amplitude artifacts. Common approaches to remove them are fraught with issues: channel interpolation, rejection of noisy intervals, and independent component analysis are time-consuming, rely on subjective user decisions, and result in signal loss. Artifact Subspace Reconstruction (ASR) is an increasingly popular approach to rapidly and automatically clean wake EEG data. Indeed, ASR adaptively removes large-amplitude artifacts regardless of their scalp topography or consistency throughout the recording. This makes ASR, at least in theory, a highly-promising tool to clean whole-night EEG. However, ASR crucially relies on calibration against a subset of relatively clean "baseline" data. This is problematic when the baseline changes substantially over time, as in whole-night EEG data. Here we tackled this issue and, for the first time, validated ASR for cleaning sleep EEG. We demonstrate that ASR applied out-of-the-box, with the parameters recommended for wake EEG, results in the dramatic removal of slow waves. We also provide an appropriate procedure to use ASR for automatic and rapid cleaning of whole-night sleep EEG data or any long EEG recording. Our procedure is freely available in Dusk2Dawn, an open-source plugin for EEGLAB.

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Dusk2Dawn:一个EEGLAB插件,用于使用伪影子空间重建(ASR)自动清洁整夜睡眠脑电图。
整夜睡眠的脑电图数据受到几种类型的大幅度伪影的困扰。去除它们的常见方法充满了问题:信道插值、噪声区间的抑制和独立分量分析耗时,依赖于主观用户决策,并导致信号丢失。伪影子空间重建(ASR)是一种越来越流行的快速自动清理清醒脑电数据的方法。事实上,ASR自适应地去除大幅度伪影,而不管它们在整个记录过程中的头皮形貌或一致性如何。这使得ASR,至少在理论上,成为一种非常有前途的工具来清洁整晚的脑电图。然而,ASR主要依赖于相对干净的“基线”数据子集的校准。当基线随着时间的推移而显著变化时,这是有问题的,比如在整晚的EEG数据中。在这里,我们解决了这个问题,并首次验证了ASR用于清洁睡眠脑电图。我们证明,ASR采用开箱即用的方法,采用尾波脑电图推荐的参数,可以显著去除慢波。我们还提供了一种适当的程序来使用ASR来自动快速清洁整夜睡眠EEG数据或任何长时间清醒的EEG数据。我们的程序在Dusk2Dawn中免费提供,这是EEGLAB的开源插件。
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来源期刊
Sleep
Sleep 医学-临床神经学
CiteScore
10.10
自引率
10.70%
发文量
1134
审稿时长
3 months
期刊介绍: SLEEP® publishes findings from studies conducted at any level of analysis, including: Genes Molecules Cells Physiology Neural systems and circuits Behavior and cognition Self-report SLEEP® publishes articles that use a wide variety of scientific approaches and address a broad range of topics. These may include, but are not limited to: Basic and neuroscience studies of sleep and circadian mechanisms In vitro and animal models of sleep, circadian rhythms, and human disorders Pre-clinical human investigations, including the measurement and manipulation of sleep and circadian rhythms Studies in clinical or population samples. These may address factors influencing sleep and circadian rhythms (e.g., development and aging, and social and environmental influences) and relationships between sleep, circadian rhythms, health, and disease Clinical trials, epidemiology studies, implementation, and dissemination research.
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