Transcriptome assemblies of two deep-sea octocorals Calyptrophora lyra and Chrysogorgia stellata from West Pacific seamount, Godin Guyot

IF 1.3 4区 生物学 Q4 GENETICS & HEREDITY Marine genomics Pub Date : 2023-02-01 DOI:10.1016/j.margen.2022.101006
Taewoo Ryu , Sung-Jin Hwang , Seonock Woo
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引用次数: 1

Abstract

This is the first report of the transcriptome assemblies of the deep-sea octocorals Calyptrophora lyra and Chrysogorgia stellata, which were collected in a survey of the West Pacific seamounts area. We sequenced the transcriptomes of C. lyra and C. stellata using the Illumina NovaSeq 6000 System. De novo assembly and analysis of the coding regions predicted 193,796 unigenes from the total 116,441,796 reads of C. lyra and 235,513 unigenes from the total 122,031,866 reads of C. stellata. Our data are a valuable resource with which to understand the ecological and biological characteristics of the West Pacific deep-sea corals. The data will also contribute to the study of deep-sea environments as extreme and limited habitats and provide direction for future research and further insight into the organismal responses of deep-sea corals to environmental changes.

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西太平洋海山两种深海八栖珊瑚Calyptrophora lyra和Chrysogorgia stellata的转录组组合
这是在对西太平洋海山地区的调查中收集的深海八珊瑚Calyptrophora lyra和Chrysogorgia stellata的转录组组合的第一份报告。我们使用Illumina NovaSeq 6000系统对七弦琴和星琴的转录组进行测序。编码区的从头组装和分析预测了来自七弦琴116441796个读数的193796个单基因和来自星形琴122031866个读数的235513个单基因。我们的数据是了解西太平洋深海珊瑚生态和生物特征的宝贵资源。这些数据还将有助于研究作为极端和有限栖息地的深海环境,并为未来的研究和进一步深入了解深海珊瑚对环境变化的生物反应提供方向。
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来源期刊
Marine genomics
Marine genomics 生物-遗传学
CiteScore
3.60
自引率
5.30%
发文量
50
审稿时长
29 days
期刊介绍: The journal publishes papers on all functional and evolutionary aspects of genes, chromatin, chromosomes and (meta)genomes of marine (and freshwater) organisms. It deals with new genome-enabled insights into the broader framework of environmental science. Topics within the scope of this journal include: • Population genomics and ecology • Evolutionary and developmental genomics • Comparative genomics • Metagenomics • Environmental genomics • Systems biology More specific topics include: geographic and phylogenomic characterization of aquatic organisms, metabolic capacities and pathways of organisms and communities, biogeochemical cycles, genomics and integrative approaches applied to microbial ecology including (meta)transcriptomics and (meta)proteomics, tracking of infectious diseases, environmental stress, global climate change and ecosystem modelling.
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