Construction and validation of the diagnostic model of keloid based on weighted gene co-expression network analysis (WGCNA) and differential expression analysis.

IF 1 4区 医学 Q3 ORTHOPEDICS Journal of Plastic Surgery and Hand Surgery Pub Date : 2023-02-01 DOI:10.1080/2000656X.2021.2024557
Jiaheng Xie, Xiang Zhang, Kai Zhang, Chuyan Wu, Gang Yao, Jingping Shi, Liang Chen, Yiming Hu, Dan Wu, Guoyong Yin, Ming Wang
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引用次数: 8

Abstract

Keloid is a disease that seriously affects the aesthetic appearance of the body. In contrast to normal skin or hypertrophic scars, keloid tissue extends beyond the initial site of injury. Patients may complain of pain, itching, or burning. Although multiple treatments exist, none is uniformly successful. Genetic advances have made it possible to explore differences in gene expression between keloids and normal skin. Identifying the biomarker for keloid is beneficial to the mechanism exploration and treatment development of keloid. In this study, we identified seven genes with significant differences in keloids through weighted gene co-expression network analysis(WGCNA) and differential expression analysis. Then, by the Lasso regression, we constructed a keloid diagnostic model using five of these genes. Further studies found that keloids could be divided into high-risk and low-risk groups by this model, with differences in immunity, m6A methylation, and pyroptosis. Finally, we verified the accuracy of the diagnostic model in clinical RNA-sequencing data.

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基于加权基因共表达网络分析(WGCNA)和差异表达分析的瘢痕疙瘩诊断模型的构建与验证
瘢痕疙瘩是一种严重影响身体美观的疾病。与正常皮肤或增生性疤痕不同,瘢痕疙瘩组织的扩展范围超出了最初的损伤部位。病人可能会抱怨疼痛、瘙痒或灼烧。虽然有多种治疗方法,但没有一种是完全成功的。遗传学的进步使得探索瘢痕疙瘩和正常皮肤之间基因表达的差异成为可能。识别瘢痕疙瘩的生物标志物有助于瘢痕疙瘩的机制探索和治疗发展。在本研究中,我们通过加权基因共表达网络分析(WGCNA)和差异表达分析,鉴定出7个在瘢痕疙瘩中存在显著差异的基因。然后,通过Lasso回归,我们使用其中的五个基因构建了瘢痕疙瘩诊断模型。进一步研究发现,该模型可将瘢痕疙瘩分为高危组和低危组,在免疫、m6A甲基化和焦亡方面存在差异。最后,我们在临床rna测序数据中验证了诊断模型的准确性。
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来源期刊
CiteScore
2.10
自引率
0.00%
发文量
108
审稿时长
6-12 weeks
期刊介绍: The purpose of the Journal of Plastic Surgery and Hand Surgery is to serve as an international forum for plastic surgery, hand surgery and related research. Interest is focused on original articles on basic research and clinical evaluation. The scope of the journal comprises: • Articles concerning operative methods and follow-up studies • Research articles on subjects related to plastic and hand surgery • Articles on cranio-maxillofacial surgery, including cleft lip and palate surgery. Extended issues are published occasionally, dealing with special topics such as microvascular surgery, craniofacial surgery, or burns. Supplements, usually doctoral theses, may also be published. The journal is published for the Acta Chirurgica Scandinavica society and sponsored by the Key Foundation, Sweden. The journal was previously published as Scandinavian Journal of Plastic and Reconstructive Surgery and Hand Surgery.
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