Preconditioning of clinical data for intraocular lens formula constant optimisation using Random Forest Quantile Regression Trees

Abstract

Purpose

To implement a fully data driven strategy for identifying outliers in clinical datasets used for formula constant optimisation, in order to achieve proper formula predicted refraction after cataract surgery, and to assess the capabilities of this outlier detection method.

Methods

2 clinical datasets (DS1/DS2: N = 888/403) of eyes treated with a monofocal aspherical intraocular lens (Hoya XY1/Johnson&Johnson Vision Z9003) containing preoperative biometric data, power of the lens implant and postoperative spherical equivalent (SEQ) were transferred to us for formula constant optimisation. Original datasets were used to generate baseline formula constants. A random forest quantile regression algorithm was set up using bootstrap resampling with replacement. Quantile regression trees were grown and the 25% and 75% quantile, and the interquartile range were extracted from SEQ and formula predicted refraction REF for the SRKT, Haigis and Castrop formulae. Fences were defined from the quantiles and data points outside the fences were marked and removed as outliers before recalculating the formula constants.

Results

N_B = 1000 bootstrap samples were derived from both datasets, and random forest quantile regression trees were grown to model SEQ versus REF and to estimate the median and 25% and 75% quantiles. The fence boundaries were defined as being from 25% quantile - 1.5·IQR to 75% quantile + 1.5·IQR, with data points outside the fence being marked as outliers. In total, for DS1 and DS2, 25/27/32 and 4/5/4 data points were identified as outliers for the SRKT/Haigis/Castrop formulae respectively. The respective root mean squared formula prediction errors for the three formulae were slightly reduced from: 0.4370 dpt;0.4449 dpt/0.3625 dpt;0.4056 dpt/and 0.3376 dpt;0.3532 dpt to: 0.4271 dpt;0.4348 dpt/0.3528 dpt;0.3952 dpt/0.3277 dpt;0.3432 dpt for DS1;DS2.

Conclusion

We were able to prove that with random forest quantile regression trees a fully data driven outlier identification strategy acting in the response space is achievable. In a real life scenario this strategy has to be complemented by an outlier identification method acting in the parameter space for a proper qualification of datasets prior to formula constant optimisation.