{"title":"Systolic filter for fast DNA similarity search","authors":"P. Guerdoux-Jamet, D. Lavenier","doi":"10.1109/ASAP.1995.522918","DOIUrl":null,"url":null,"abstract":"This paper presents a systolic filter for speeding up the scan of DNA databases. The filter acts as a co-processor which performs the more intensive computations occurring during the process. Our validation, based on a FPGA prototype board tightly connected to a workstation, has shown that the filter may boost the performance of the machine by a factor ranging from 50 to 400 over current workstations.","PeriodicalId":354358,"journal":{"name":"Proceedings The International Conference on Application Specific Array Processors","volume":"39 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"1995-07-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"22","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Proceedings The International Conference on Application Specific Array Processors","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/ASAP.1995.522918","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 22
Abstract
This paper presents a systolic filter for speeding up the scan of DNA databases. The filter acts as a co-processor which performs the more intensive computations occurring during the process. Our validation, based on a FPGA prototype board tightly connected to a workstation, has shown that the filter may boost the performance of the machine by a factor ranging from 50 to 400 over current workstations.
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