Application of deep intensive learning in RNA secondary structure prediction

Jiaming Gu
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The function of RNA is determined primarily by the thermodynamic three-stage folding of a sequence of nucleotides. The hydrogen bond between nucleotides determines the main driving force for the formation of a three-stage structure. Smaller folds around the hydrogen bond are called secondary structures of RNA. The three-stage structure determines the function and nature of RNA, and traditional manual exploration of RNA tertiary structures, such as X-ray crystal diffraction, and MRI to determine RNA tertiary structures, while accurate and reliable, is labor-intensive and time-consuming. Accurate judgment of secondary structures has greatly influenced the study of RNA tertiary structures and deeper studies, and the exploration of RNA secondary structures with artificial intelligence can lead to more accurate, rapid and efficient results. In the current field, artificial intelligence algorithms to predict RNA secondary structures usually use deep learning, genetic algorithms and other means, through neural network fitting to obtain prediction results. This approach is supervised learning, requiring a large amount of RNA secondary structure data to be collated prior to the study, while the models trained are not explanatory. As we all know, RNA folding is driven primarily by thermodynamics, can we train a model that learns the principles of RNA folding on its own, based on limited structural data? The main research direction of this paper is to explore the secondary structure model of ribonucleic acid independently by using algorithms in the way of computer deep-strengthening learning. Deep-enhanced learning primarily transforms the prediction process of the RNA secondary structure into the process of intelligent decision-making to explore optimal decision-making. Due to the limited training set and computing power, this paper explores the feasibility and development potential of deep-enhanced learning algorithms in RNA secondary structure prediction. In the current field, artificial intelligence algorithms to predict RNA secondary structures usually use deep learning, genetic algorithms and other means, through neural network fitting to obtain prediction results. This approach is supervised learning, requiring a large amount of RNA secondary structure data to be collated prior to the study, while the models trained are not explanatory. As we all know, RNA folding is driven primarily by thermodynamics, can we train a model that learns the principles of RNA folding on its own, based on limited structural data? The main research direction of this paper is to explore the secondary structure model of ribonucleic acid independently by using algorithms in the way of computer deep-strengthening learning. Deep-enhanced learning primarily transforms the prediction process of the RNA secondary structure into the process of intelligent decision-making to explore optimal decision-making. Due to the limited training set and computing power, this paper explores the feasibility and development potential of deep-enhanced learning algorithms in RNA secondary structure prediction. The main research direction of this paper is to explore the secondary structure model of ribonucleic acid independently by using algorithms in the way of computer deep-strengthening learning. Deep-enhanced learning primarily transforms the prediction process of the RNA secondary structure into the process of intelligent decision-making to explore optimal decision-making. Due to the limited training set and computing power, this paper explores the feasibility and development potential of deep-enhanced learning algorithms in RNA secondary structure prediction.","PeriodicalId":376014,"journal":{"name":"2021 IEEE International Conference on Computer Science, Artificial Intelligence and Electronic Engineering (CSAIEE)","volume":"108 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2021-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"2021 IEEE International Conference on Computer Science, Artificial Intelligence and Electronic Engineering (CSAIEE)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/CSAIEE54046.2021.9543134","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 1

Abstract

With the development of the novel coronavirus epidemic, virus detection and research has gradually become a hot research direction. The structure of the virus is mainly divided into protein shell and ribonucleic acid (RNA). RNA is an important information-carrying biopolymer within biological cells that plays a key role in regulatory processes and transcription control. Studies of RNA-induced conditions, including human immunodeficiency viruses, neocymavirus, and even Alzheimer's and Parkinson's disease, require an understanding of the structure and function of RNA. As a result, the study of RNA is becoming increasingly important in a range of applications, including biology and medicine. The function of RNA is determined primarily by the thermodynamic three-stage folding of a sequence of nucleotides. The hydrogen bond between nucleotides determines the main driving force for the formation of a three-stage structure. Smaller folds around the hydrogen bond are called secondary structures of RNA. The three-stage structure determines the function and nature of RNA, and traditional manual exploration of RNA tertiary structures, such as X-ray crystal diffraction, and MRI to determine RNA tertiary structures, while accurate and reliable, is labor-intensive and time-consuming. Accurate judgment of secondary structures has greatly influenced the study of RNA tertiary structures and deeper studies, and the exploration of RNA secondary structures with artificial intelligence can lead to more accurate, rapid and efficient results. In the current field, artificial intelligence algorithms to predict RNA secondary structures usually use deep learning, genetic algorithms and other means, through neural network fitting to obtain prediction results. This approach is supervised learning, requiring a large amount of RNA secondary structure data to be collated prior to the study, while the models trained are not explanatory. As we all know, RNA folding is driven primarily by thermodynamics, can we train a model that learns the principles of RNA folding on its own, based on limited structural data? The main research direction of this paper is to explore the secondary structure model of ribonucleic acid independently by using algorithms in the way of computer deep-strengthening learning. Deep-enhanced learning primarily transforms the prediction process of the RNA secondary structure into the process of intelligent decision-making to explore optimal decision-making. Due to the limited training set and computing power, this paper explores the feasibility and development potential of deep-enhanced learning algorithms in RNA secondary structure prediction. In the current field, artificial intelligence algorithms to predict RNA secondary structures usually use deep learning, genetic algorithms and other means, through neural network fitting to obtain prediction results. This approach is supervised learning, requiring a large amount of RNA secondary structure data to be collated prior to the study, while the models trained are not explanatory. As we all know, RNA folding is driven primarily by thermodynamics, can we train a model that learns the principles of RNA folding on its own, based on limited structural data? The main research direction of this paper is to explore the secondary structure model of ribonucleic acid independently by using algorithms in the way of computer deep-strengthening learning. Deep-enhanced learning primarily transforms the prediction process of the RNA secondary structure into the process of intelligent decision-making to explore optimal decision-making. Due to the limited training set and computing power, this paper explores the feasibility and development potential of deep-enhanced learning algorithms in RNA secondary structure prediction. The main research direction of this paper is to explore the secondary structure model of ribonucleic acid independently by using algorithms in the way of computer deep-strengthening learning. Deep-enhanced learning primarily transforms the prediction process of the RNA secondary structure into the process of intelligent decision-making to explore optimal decision-making. Due to the limited training set and computing power, this paper explores the feasibility and development potential of deep-enhanced learning algorithms in RNA secondary structure prediction.
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深度强化学习在RNA二级结构预测中的应用
随着新型冠状病毒疫情的发展,病毒检测与研究逐渐成为热点研究方向。病毒的结构主要分为蛋白质外壳和核糖核酸(RNA)。RNA是生物细胞内重要的携带信息的生物聚合物,在调控过程和转录控制中起着关键作用。RNA诱导疾病的研究,包括人类免疫缺陷病毒、新细胞病毒,甚至阿尔茨海默病和帕金森病,都需要了解RNA的结构和功能。因此,RNA的研究在包括生物学和医学在内的一系列应用中变得越来越重要。RNA的功能主要是由核苷酸序列的热力学三阶段折叠决定的。核苷酸之间的氢键决定了三级结构形成的主要驱动力。氢键周围较小的褶皱被称为RNA的二级结构。三级结构决定了RNA的功能和性质,传统的手工探索RNA三级结构,如x射线晶体衍射、MRI确定RNA三级结构,虽然准确可靠,但费时费力。二级结构的准确判断极大地影响了RNA三级结构的研究和更深入的研究,利用人工智能对RNA二级结构的探索可以获得更准确、快速和高效的结果。在当前领域,人工智能算法预测RNA二级结构通常采用深度学习、遗传算法等手段,通过神经网络拟合获得预测结果。这种方法是监督式学习,在研究之前需要对大量的RNA二级结构数据进行整理,而训练出来的模型也不具有解释性。我们都知道,RNA折叠主要是由热力学驱动的,我们能不能训练一个基于有限的结构数据,自己学习RNA折叠原理的模型?本文的主要研究方向是以计算机深度强化学习的方式,利用算法独立探索核糖核酸的二级结构模型。深度增强学习主要将RNA二级结构的预测过程转化为智能决策过程,探索最优决策。由于训练集和计算能力有限,本文探讨了深度增强学习算法在RNA二级结构预测中的可行性和发展潜力。在当前领域,人工智能算法预测RNA二级结构通常采用深度学习、遗传算法等手段,通过神经网络拟合获得预测结果。这种方法是监督式学习,在研究之前需要对大量的RNA二级结构数据进行整理,而训练出来的模型也不具有解释性。我们都知道,RNA折叠主要是由热力学驱动的,我们能不能训练一个基于有限的结构数据,自己学习RNA折叠原理的模型?本文的主要研究方向是以计算机深度强化学习的方式,利用算法独立探索核糖核酸的二级结构模型。深度增强学习主要将RNA二级结构的预测过程转化为智能决策过程,探索最优决策。由于训练集和计算能力有限,本文探讨了深度增强学习算法在RNA二级结构预测中的可行性和发展潜力。本文的主要研究方向是以计算机深度强化学习的方式,利用算法独立探索核糖核酸的二级结构模型。深度增强学习主要将RNA二级结构的预测过程转化为智能决策过程,探索最优决策。由于训练集和计算能力有限,本文探讨了深度增强学习算法在RNA二级结构预测中的可行性和发展潜力。
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