{"title":"Parallel sequence comparison and alignment","authors":"R. Hughey","doi":"10.1109/ASAP.1995.522916","DOIUrl":null,"url":null,"abstract":"Sequence comparisons, a vital research tool in computational biology, is based on a simple O(n/sup 2/) algorithm that easily maps to a linear array of processors. This paper reviews and compares high-performance sequence analysis on general-purpose supercomputers and single-purpose, reconfigurable, and programmable co-processors. The difficulty of comparing hardware from published performance figures is also noted.","PeriodicalId":354358,"journal":{"name":"Proceedings The International Conference on Application Specific Array Processors","volume":"32 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"1995-07-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"25","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Proceedings The International Conference on Application Specific Array Processors","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/ASAP.1995.522916","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 25
Abstract
Sequence comparisons, a vital research tool in computational biology, is based on a simple O(n/sup 2/) algorithm that easily maps to a linear array of processors. This paper reviews and compares high-performance sequence analysis on general-purpose supercomputers and single-purpose, reconfigurable, and programmable co-processors. The difficulty of comparing hardware from published performance figures is also noted.
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