{"title":"A New Repeat Family Detection Method Based on Sparse de Bruijn Graph","authors":"Hong Zhou, Zheng Zhao, Hongpo Wang","doi":"10.1109/KAM.2009.27","DOIUrl":null,"url":null,"abstract":"Eukaryotic genomes are typically large and filled with both genes and multiple classes of repetitive DNA. The repetitive DNAs are a rapidly evolving genome component that can provide the raw material for novel selected functions and also indicate the mechanisms and history of genome evolution in any ancestral lineage. In order to facilitate a broader range of repeat analyses, we present a graph method for repeat family detection and characterization by using the sparse de Bruijn graphs. This program was written in JAVA and with numerous adjustable parameters. Testing of this program indicated that it can found all of the major repeats.","PeriodicalId":192986,"journal":{"name":"2009 Second International Symposium on Knowledge Acquisition and Modeling","volume":"91 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2009-12-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"2009 Second International Symposium on Knowledge Acquisition and Modeling","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/KAM.2009.27","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
Abstract
Eukaryotic genomes are typically large and filled with both genes and multiple classes of repetitive DNA. The repetitive DNAs are a rapidly evolving genome component that can provide the raw material for novel selected functions and also indicate the mechanisms and history of genome evolution in any ancestral lineage. In order to facilitate a broader range of repeat analyses, we present a graph method for repeat family detection and characterization by using the sparse de Bruijn graphs. This program was written in JAVA and with numerous adjustable parameters. Testing of this program indicated that it can found all of the major repeats.
京公网安备 11010802042870号
京ICP备2023020795号-1
分享
求助内容：
应助结果提醒方式：
扫码关注我们
