Identification of Prognostic Markers for LUAD based on Rank Expression of Long non-coding RNA

Z. Chang, Hongmei Sun, Wenyuan Zhao, Yongjing Liu, Ning Zhao, Xiaole Han, Qiang Zhang, Zichuang Yan, Cheng Wu, Yunzhen Wei
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Abstract

lung adenocarcinoma (LUAD) is the highest incidence of malignant tumors in China, because its early symptoms are not easily ignored by most people, so screening reliable markers is the focus of research. In order to screen stable, cross-platform prognostic lncRNA of LUAD, we combined gene expression profiles and RNAseq data to screen stable lncRNA pairs shared by both platforms and significantly reversed lncRNA pairs in LUAD samples, and then screened the prognostic-related lncRNA from the reversed lncRNA pairs. The stability of the gene pairs obtained from the normal samples was 98.72%. Twenty pairs of survival-related significantly reversed lncRNA gene pairs with 33 lncRNA were found. The results of functional enrichment showed that the functions of these lncRNA pairs were consistent with the known results. Because of its cross-platform and easy detection of independent samples, this result can be better applied to clinical diagnosis and can detect the risk and prognosis of possible LUAD in advance.
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基于长链非编码RNA秩表达的LUAD预后标志物鉴定
肺腺癌(LUAD)是中国发病率最高的恶性肿瘤,由于其早期症状不易被大多数人忽视,因此筛选可靠的标志物是研究的重点。为了筛选稳定的、跨平台的LUAD预后lncRNA,我们结合基因表达谱和RNAseq数据,筛选两个平台共享的稳定lncRNA对和LUAD样本中显著逆转的lncRNA对,然后从逆转的lncRNA对中筛选出与预后相关的lncRNA。从正常样品中获得的基因对的稳定性为98.72%。共发现20对与生存相关的lncRNA基因对,共33对lncRNA。功能富集结果表明,这些lncRNA对的功能与已知结果一致。该结果跨平台,独立样本检测方便,可更好地应用于临床诊断,提前发现可能发生LUAD的风险及预后。
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